Mercurial > repos > prog > lcmsmatching
comparison MsDbOutputStream.R @ 6:b8f70d8216b3 draft
planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit b3a4e34cf9356447ae3507cc6fe2ff6a1f24afbc-dirty
| author | prog |
|---|---|
| date | Mon, 27 Mar 2017 06:27:29 -0400 |
| parents | 3afe41d3e9e7 |
| children |
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| 5:18254e8d1b72 | 6:b8f70d8216b3 |
|---|---|
| 5 | 5 |
| 6 ##################### | 6 ##################### |
| 7 # CLASS DECLARATION # | 7 # CLASS DECLARATION # |
| 8 ##################### | 8 ##################### |
| 9 | 9 |
| 10 MsDbOutputStream <- setRefClass("MsDbOutputStream", fields = list(.keep.unused = "logical", .one.line = "logical", .match.sep = "character", .output.fields = "ANY", .multval.field.sep = "character", .first.val = "logical", .ascii = "logical", .noapostrophe = "logical", .noplusminus = "logical", .nogreek = "logical")) | 10 MsDbOutputStream <- setRefClass("MsDbOutputStream", fields = list(.keep.unused = "logical", .one.line = "logical", .match.sep = "character", .multval.field.sep = "character", .first.val = "logical", .ascii = "logical", .noapostrophe = "logical", .noplusminus = "logical", .nogreek = "logical", .rtunit = 'character')) |
| 11 | 11 |
| 12 ############### | 12 ############### |
| 13 # CONSTRUCTOR # | 13 # CONSTRUCTOR # |
| 14 ############### | 14 ############### |
| 15 | 15 |
| 18 #' @param keep.unused Set to \code{TRUE} if you want to keep in the output, unused columns of the input. | 18 #' @param keep.unused Set to \code{TRUE} if you want to keep in the output, unused columns of the input. |
| 19 #' @param one.line Set to \code{TRUE} if you want to output only one line for each input line. | 19 #' @param one.line Set to \code{TRUE} if you want to output only one line for each input line. |
| 20 #' @return | 20 #' @return |
| 21 #' @examples | 21 #' @examples |
| 22 #' stream <- MsDbOutputDataFrameStream$new(one.line = TRUE) | 22 #' stream <- MsDbOutputDataFrameStream$new(one.line = TRUE) |
| 23 MsDbOutputStream$methods( initialize = function(keep.unused = FALSE, one.line = FALSE, match.sep = MSDB.DFT.MATCH.SEP, output.fields = msdb.get.dft.output.fields(), multval.field.sep = MSDB.DFT.OUTPUT.MULTIVAL.FIELD.SEP, first.val = FALSE, ascii = FALSE, noapostrophe = FALSE, noplusminus = FALSE, nogreek = FALSE, ...) { | 23 MsDbOutputStream$methods( initialize = function(keep.unused = FALSE, one.line = FALSE, match.sep = MSDB.DFT.MATCH.SEP, multval.field.sep = MSDB.DFT.OUTPUT.MULTIVAL.FIELD.SEP, first.val = FALSE, ascii = FALSE, noapostrophe = FALSE, noplusminus = FALSE, nogreek = FALSE, rtunit = MSDB.RTUNIT.SEC, ...) { |
| 24 | |
| 25 callSuper(...) | |
| 24 | 26 |
| 25 .keep.unused <<- keep.unused | 27 .keep.unused <<- keep.unused |
| 26 .one.line <<- one.line | 28 .one.line <<- one.line |
| 27 .match.sep <<- match.sep | 29 .match.sep <<- match.sep |
| 28 .output.fields <<- output.fields | |
| 29 .multval.field.sep <<- multval.field.sep | 30 .multval.field.sep <<- multval.field.sep |
| 30 .first.val <<- first.val | 31 .first.val <<- first.val |
| 31 .ascii <<- ascii | 32 .ascii <<- ascii |
| 32 .noapostrophe <<- noapostrophe | 33 .noapostrophe <<- noapostrophe |
| 33 .noplusminus <<- noplusminus | 34 .noplusminus <<- noplusminus |
| 34 .nogreek <<- nogreek | 35 .nogreek <<- nogreek |
| 35 | 36 .rtunit <<- rtunit |
| 36 callSuper(...) | |
| 37 }) | 37 }) |
| 38 | 38 |
| 39 ################# | 39 ################# |
| 40 # MATCHED PEAKS # | 40 # MATCHED PEAKS # |
| 41 ################# | 41 ################# |