Mercurial > repos > pjbriggs > trimmomatic

view tool_dependencies.xml @ 4:2801d3cd21ee draft

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Updated to Trimmomatic 0.36.
author pjbriggs
date Thu, 14 Jul 2016 09:06:00 -0400
parents a2e6088d1165
children b0315888eb4d
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<?xml version="1.0"?>
<tool_dependency>
    <package name="trimmomatic" version="0.36">
      <install version="1.0">
	<actions>
	  <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip</action>
	  <action type="move_file">
	    <source>trimmomatic-0.36.jar</source>
	    <destination>$INSTALL_DIR</destination>
	  </action>
          <action type="move_directory_files">
            <source_directory>adapters</source_directory>
            <destination_directory>$INSTALL_DIR/adapters</destination_directory>
          </action>
	  <action type="set_environment">
	    <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
	  </action>
	  <action type="set_environment">
	    <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
	  </action>
	</actions>
      </install>
      <readme>Trimmomatic requires the Java Runtime Environment
      </readme>
    </package>
</tool_dependency>