Mercurial > repos > pjbriggs > macs21

changeset 20:4d41e5cda4e6 draft

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Uploaded
author pjbriggs
date Mon, 19 Mar 2018 05:50:30 -0400
parents 51303ba3fbbe
children 228d8669c559
files macs21_wrapper.xml
diffstat 1 files changed, 17 insertions(+), 17 deletions(-) [+]
line wrap: on
line diff
--- a/macs21_wrapper.xml	Fri Mar 09 09:21:56 2018 -0500
+++ b/macs21_wrapper.xml	Mon Mar 19 05:50:30 2018 -0400
@@ -101,7 +101,7 @@
   ]]></command>
   <inputs>
     <!--experiment name used as base for output file names -->
-    <param name="experiment_name" type="text" value="MACS2.1.0 in Galaxy" size="50"
+    <param name="experiment_name" type="text" value="MACS2.1 in Galaxy" size="50"
 	   label="Experiment Name"/>
     <!--choose 'broad' or 'narrow' regions-->
     <conditional name="broad_options">
@@ -279,7 +279,7 @@
     <!-- Peak calling without bigwig output -->
     <test>
       <!-- Inputs -->
-      <param name="experiment_name" value="test_MACS2.1.0" />
+      <param name="experiment_name" value="test_MACS2.1.1" />
       <param name="broad_regions" value="" />
       <param name="format" value="BED" />
       <param name="input_chipseq_file1" value="test_region_IP.bed" dbkey="galGal3"
@@ -305,20 +305,20 @@
       <param name="nomodel_type_selector" value="nomodel" />
       <param name="nomodel_type|extsize" value="243" />
       <!-- Outputs -->
-      <output name="output_extra_files" file="test_MACS2.1.0_html_report.zip"
+      <output name="output_extra_files" file="test_MACS2.1.1_html_report.zip"
 	      compare="sim_size" delta="1500" />
-      <output name="output_summits_bed_file" file="test_MACS2.1.0_summits.bed" />
-      <output name="output_narrowpeaks_file" file="test_MACS2.1.0_peaks_narrowPeak.interval" />
+      <output name="output_summits_bed_file" file="test_MACS2.1.1_summits.bed" />
+      <output name="output_narrowpeaks_file" file="test_MACS2.1.1_peaks_narrowPeak.interval" />
       <output name="output_xls_to_interval_peaks_file"
-	      file="test_MACS2.1.0_peaks.xls.re_match"
+	      file="test_MACS2.1.1_peaks.xls.re_match"
 	      compare="re_match" lines_diff="1" />
-      <output name="output_treat_pileup_file" file="test_MACS2.1.0_treat_pileup.bdg" />
-      <output name="output_lambda_bedgraph_file" file="test_MACS2.1.0_control_lambda.bdg" />
+      <output name="output_treat_pileup_file" file="test_MACS2.1.1_treat_pileup.bdg" />
+      <output name="output_lambda_bedgraph_file" file="test_MACS2.1.1_control_lambda.bdg" />
     </test>
     <!-- Peak calling with bigwig output -->
     <test>
       <!-- Inputs -->
-      <param name="experiment_name" value="test_MACS2.1.0" />
+      <param name="experiment_name" value="test_MACS2.1.1" />
       <param name="broad_regions" value="" />
       <param name="format" value="BED" />
       <param name="input_chipseq_file1" value="test_region_IP.bed" dbkey="galGal3"
@@ -344,23 +344,23 @@
       <param name="nomodel_type_selector" value="nomodel" />
       <param name="nomodel_type|extsize" value="243" />
       <!-- Outputs -->
-      <output name="output_extra_files" file="test_MACS2.1.0_bw_html_report.zip"
+      <output name="output_extra_files" file="test_MACS2.1.1_bw_html_report.zip"
 	      compare="sim_size" delta="2500" />
-      <output name="output_summits_bed_file" file="test_MACS2.1.0_summits.bed" />
-      <output name="output_narrowpeaks_file" file="test_MACS2.1.0_peaks_narrowPeak.interval" />
+      <output name="output_summits_bed_file" file="test_MACS2.1.1_summits.bed" />
+      <output name="output_narrowpeaks_file" file="test_MACS2.1.1_peaks_narrowPeak.interval" />
       <output name="output_xls_to_interval_peaks_file"
-	      file="test_MACS2.1.0_peaks.xls.re_match"
+	      file="test_MACS2.1.1_peaks.xls.re_match"
 	      compare="re_match" lines_diff="1" />
-      <output name="output_treat_pileup_file" file="test_MACS2.1.0_treat_pileup.bdg" />
-      <output name="output_lambda_bedgraph_file" file="test_MACS2.1.0_control_lambda.bdg" />
-      <output name="output_bigwig_file" file="test_MACS2.1.0_treat_pileup.bw"
+      <output name="output_treat_pileup_file" file="test_MACS2.1.1_treat_pileup.bdg" />
+      <output name="output_lambda_bedgraph_file" file="test_MACS2.1.1_control_lambda.bdg" />
+      <output name="output_bigwig_file" file="test_MACS2.1.1_treat_pileup.bw"
 	      compare="sim_size" />
     </test>
   </tests>
   <help>
 **What it does**
 
-MACS (Model-based Analysis of ChIP-seq) 2.1.0 provides algorithms for identifying
+MACS (Model-based Analysis of ChIP-seq) 2.1.1 provides algorithms for identifying
 transcript factor binding sites. The program can be used either for ChIP-Seq data alone,
 or with control sample data to improve specificity.