changeset 7:7ed66f11cdcc draft

Install bx_python dependency from toolshed.

--- a/tool_dependencies.xml	Tue Oct 18 07:36:43 2016 -0400
+++ b/tool_dependencies.xml	Tue Oct 18 08:09:31 2016 -0400
@@ -4,6 +4,10 @@
   <package name="R" version="3.1.2">
     <repository changeset_revision="1ca39eb16186" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
+  <!-- bx_python from main/test toolshed -->
+  <package name="bx_python" version="0.7.1">
+    <repository changeset_revision="6a811020ff2f" name="package_bx_python_0_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
   <!-- Python mysqldb package -->
   <package name="python_mysqldb" version="1.2.5">
     <install version="1.0">
@@ -22,28 +26,6 @@
     </install>
     <readme>Installs Python module MySQLdb 1.2.5</readme>
   </package>
-  <!-- bx_python
-       This is cribbed from devteam's 'package_bx_python_0_7' in the main
-       toolshed:
-       https://toolshed.g2.bx.psu.edu/view/devteam/package_bx_python_0_7
-  -->
-  <package name="bx_python" version="0.7.1">
-    <install version="1.0">
-      <actions>
-        <action type="setup_virtualenv">
-numpy==1.7.1
-bx-python==0.7.1
-        </action>
-        <action type="set_environment">
-          <environment_variable action="set_to" name="BX_PYTHON_PATH">$INSTALL_DIR</environment_variable>
-        </action>
-      </actions>
-    </install>
-    <readme>
-      Installation of bx-python 0.7.1 along with numpy 1.7.1. The installation can be
-      accessed via BX_PYTHON_PATH.
-    </readme>
-  </package>
   <!-- cistrome_ceas
        Installs the version of CEAS package found in the Cistrome
        distribution: