Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
changeset 1:a00f366adc45 draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit b63924933a03255872077beb4d0fde49d77afa92
| author | pjbriggs |
|---|---|
| date | Thu, 09 Nov 2017 10:09:33 -0500 |
| parents | b433086738d6 |
| children | a898ee628343 |
| files | README.rst |
| diffstat | 1 files changed, 11 insertions(+), 4 deletions(-) [+] |
line wrap: on
line diff
--- a/README.rst Wed Nov 08 08:43:02 2017 -0500 +++ b/README.rst Thu Nov 09 10:09:33 2017 -0500 @@ -21,9 +21,10 @@ Installing the tool in a Galaxy instance ======================================== -The tool is not currently hosted on a Galaxy toolshed both the tool -files and the dependencies must be installed manually. In addition -it is necessary to fetch and install the reference data. +The following sections describe how to install the tool files, +dependencies and reference data, and how to configure the Galaxy +instance to detect the dependencies and reference data correctly +at run time. 1. Install the dependencies --------------------------- @@ -40,7 +41,13 @@ 2. Install the tool files ------------------------- -There are two files to install: +The core tool is hosted on the Galaxy toolshed, so it can be installed +directly from there (this is the recommended route): + + * https://toolshed.g2.bx.psu.edu/view/pjbriggs/amplicon_analysis_pipeline/ + +Alternatively it can be installed manually; in this case there are two +files to install: * ``amplicon_analysis_pipeline.xml`` (the Galaxy tool definition) * ``amplicon_analysis_pipeline.py`` (the Python wrapper script)