Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
changeset 19:52052235644b draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit f0ee1ad05711ce1499c5e219373cca74d0aafeaf-dirty
| author | pjbriggs |
|---|---|
| date | Tue, 03 Jul 2018 09:31:24 -0400 |
| parents | 877d53e2d963 |
| children | 8d8aad8752f9 |
| files | amplicon_analysis_pipeline.xml tool_dependencies.xml |
| diffstat | 2 files changed, 18 insertions(+), 0 deletions(-) [+] |
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--- a/amplicon_analysis_pipeline.xml Tue Jul 03 08:22:44 2018 -0400 +++ b/amplicon_analysis_pipeline.xml Tue Jul 03 09:31:24 2018 -0400 @@ -16,6 +16,7 @@ <requirement type="package" version="2.2">rdp_classifier</requirement> <requirement type="package" version="3.2.1">R</requirement> <requirement type="package" version="1.1.3">vsearch</requirement> + <requirement type="package" version="1.2.22">uclust-qiime</requirement> <!-- microbiomeutil not available in bioconda --> <requirement type="package" version="2010-04-29">microbiomeutil</requirement> <!-- fastq_number not available in bioconda -->
--- a/tool_dependencies.xml Tue Jul 03 08:22:44 2018 -0400 +++ b/tool_dependencies.xml Tue Jul 03 09:31:24 2018 -0400 @@ -34,6 +34,23 @@ </actions> </install> </package> + <package name="uclust-qiime" version="1.2.22"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://drive5.com/uclust/uclustq1.2.22_i86linux64</action> + <action rename_to="uclust" type="move_file"> + <source>http://drive5.com/uclust/uclustq1.2.22_i86linux64</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="chmod"> + <file mode="755">$INSTALL_DIR/bin/uclust</file> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + </package> <package name="R" version="3.2.1"> <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package>