Mercurial > repos > pjbriggs > amplicon_analysis_pipeline
changeset 35:44f5057fc878 draft
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty
| author | pjbriggs |
|---|---|
| date | Mon, 15 Oct 2018 10:51:22 -0400 |
| parents | 3512b135ecb0 |
| children | c9ed9443f293 |
| files | amplicon_analysis_pipeline.xml tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/amplicon_analysis_pipeline.xml Mon Oct 15 10:40:41 2018 -0400 +++ b/amplicon_analysis_pipeline.xml Mon Oct 15 10:51:22 2018 -0400 @@ -1,7 +1,6 @@ <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.3.0"> <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description> <requirements> - <!-- non-bioconda dependencies --> <requirement type="package" version="1.2.3">amplicon_analysis_pipeline-all</requirement> </requirements> <stdio>
--- a/tool_dependencies.xml Mon Oct 15 10:40:41 2018 -0400 +++ b/tool_dependencies.xml Mon Oct 15 10:51:22 2018 -0400 @@ -4,11 +4,13 @@ <install version="1.0"> <actions> <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action> + <!-- <action type="chmod"> <file mode="755">./install_amplicon_analysis.sh</file> </action> + --> <action type="shell_command"> - ./install_amplicon_analysis.sh $INSTALL_DIR + bash ./install_amplicon_analysis.sh $INSTALL_DIR </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>