# HG changeset patch
# User pjbriggs
# Date 1539615082 14400
# Node ID 44f5057fc878977c9a7cd28e2d4a66baa498c8fd
# Parent  3512b135ecb04291063a8d7a3a92fa4061919804
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 601f7d1e21b25c583cc6e1a563029bab3f226921-dirty

diff -r 3512b135ecb0 -r 44f5057fc878 amplicon_analysis_pipeline.xml
--- a/amplicon_analysis_pipeline.xml	Mon Oct 15 10:40:41 2018 -0400
+++ b/amplicon_analysis_pipeline.xml	Mon Oct 15 10:51:22 2018 -0400
@@ -1,7 +1,6 @@
 <tool id="amplicon_analysis_pipeline" name="Amplicon Analysis Pipeline" version="1.2.3.0">
   <description>analyse 16S rRNA data from Illumina Miseq paired-end reads</description>
   <requirements>
-    <!-- non-bioconda dependencies -->
     <requirement type="package" version="1.2.3">amplicon_analysis_pipeline-all</requirement>
   </requirements>
   <stdio>
diff -r 3512b135ecb0 -r 44f5057fc878 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Oct 15 10:40:41 2018 -0400
+++ b/tool_dependencies.xml	Mon Oct 15 10:51:22 2018 -0400
@@ -4,11 +4,13 @@
     <install version="1.0">
       <actions>
 	<action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/88289d6e8376bc94eb1a86391c3de9a81b1aa8a0/install_amplicon_analysis.sh</action>
+	<!--
 	<action type="chmod">
 	  <file mode="755">./install_amplicon_analysis.sh</file>
 	</action>
+	-->
 	<action type="shell_command">
-	  ./install_amplicon_analysis.sh $INSTALL_DIR
+	  bash ./install_amplicon_analysis.sh $INSTALL_DIR
 	</action>
 	<action type="set_environment">
 	    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.2.3/bin</environment_variable>