Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

diff install_amplicon_analysis-1.3.5.sh @ 45:4bfa62618f7c draft

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 3dcfecb6c83d655529be44366d9e55913df9dffd
author pjbriggs
date Wed, 11 Dec 2019 13:45:05 +0000
parents 213b5cdecb70
children
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--- a/install_amplicon_analysis-1.3.5.sh	Mon Dec 09 13:00:31 2019 +0000
+++ b/install_amplicon_analysis-1.3.5.sh	Wed Dec 11 13:45:05 2019 +0000
@@ -88,6 +88,9 @@
     wget -q https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
     bash ./Miniconda2-latest-Linux-x86_64.sh -b -p ${CONDA_DIR}
     echo Installed conda in ${CONDA_DIR}
+    echo -n "Adding conda bin to PATH..."
+    export PATH=${CONDA_BIN}:$PATH
+    echo "ok"
     # Reset the conda version to a known working version
     # (to avoid problems observed with e.g. conda 4.7.10)
     echo ""
@@ -100,9 +103,6 @@
     echo -n "Rewriting conda shebangs..."
     rewrite_conda_shebangs
     echo "ok"
-    echo -n "Adding conda bin to PATH..."
-    export PATH=${CONDA_BIN}:$PATH
-    echo "ok"
     cd $cwd
     rm -rf $wd/*
     rmdir $wd