comparison install_amplicon_analysis-1.3.5.sh @ 45:4bfa62618f7c draft

planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 3dcfecb6c83d655529be44366d9e55913df9dffd

44:213b5cdecb70

    local wd=$(mktemp -d)
    cd $wd
    wget -q https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
    bash ./Miniconda2-latest-Linux-x86_64.sh -b -p ${CONDA_DIR}
    echo Installed conda in ${CONDA_DIR}
    # Reset the conda version to a known working version
    # (to avoid problems observed with e.g. conda 4.7.10)
    echo ""
    reset_conda_version
    # Update the installation files

    # directory path exceeds the limit for the shebang statement
    # in the conda files
    echo ""
    echo -n "Rewriting conda shebangs..."
    rewrite_conda_shebangs
    echo "ok"
    echo -n "Adding conda bin to PATH..."
    export PATH=${CONDA_BIN}:$PATH
    echo "ok"
    cd $cwd
    rm -rf $wd/*
    rmdir $wd
}

45:4bfa62618f7c

    local wd=$(mktemp -d)
    cd $wd
    wget -q https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
    bash ./Miniconda2-latest-Linux-x86_64.sh -b -p ${CONDA_DIR}
    echo Installed conda in ${CONDA_DIR}
    echo -n "Adding conda bin to PATH..."
    export PATH=${CONDA_BIN}:$PATH
    echo "ok"
    # Reset the conda version to a known working version
    # (to avoid problems observed with e.g. conda 4.7.10)
    echo ""
    reset_conda_version
    # Update the installation files

    # directory path exceeds the limit for the shebang statement
    # in the conda files
    echo ""
    echo -n "Rewriting conda shebangs..."
    rewrite_conda_shebangs
    echo "ok"
    cd $cwd
    rm -rf $wd/*
    rmdir $wd
}