Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

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planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 777167fc30406b792d0cf924753069526f8b3e5e-dirty
author pjbriggs
date Mon, 18 Jun 2018 10:08:03 -0400
parents c87b166cbfe1
children 52052235644b
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45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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1 <?xml version="1.0"?>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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2 <tool_dependency>
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3 <package name="amplicon_analysis_pipeline" version="1.2.2">
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4 <install version="1.0">
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5 <actions>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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6 <action type="download_by_url">https://github.com/MTutino/Amplicon_analysis/archive/v1.2.2.tar.gz</action>
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7 <action type="move_file">
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8 <source>Amplicon_analysis_pipeline.sh</source>
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9 <destination>$INSTALL_DIR/Amplicon_analysis_pipeline</destination>
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10 </action>
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11 <action type="move_file">
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12 <source>FIRST_STEP.sh</source>
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13 <destination>$INSTALL_DIR/Amplicon_analysis_pipeline</destination>
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14 </action>
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15 <action type="move_file">
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16 <source>VSEARCH.sh</source>
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17 <destination>$INSTALL_DIR/Amplicon_analysis_pipeline</destination>
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18 </action>
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19 <action type="move_file">
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20 <source>STAT_ANALYSIS.sh</source>
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21 <destination>$INSTALL_DIR/Amplicon_analysis_pipeline</destination>
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22 </action>
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23 <action type="move_file">
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24 <source>THIRD_STEP.sh</source>
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25 <destination>$INSTALL_DIR/Amplicon_analysis_pipeline</destination>
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26 </action>
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27 <action type="move_directory_files">
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28 <source_directory>uc2otutab</source_directory>
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29 <destination_directory>$INSTALL_DIR/Amplicon_analysis_pipeline/uc2otutab</destination_directory>
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30 </action>
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31 <action type="set_environment">
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/Amplicon_analysis_pipeline</environment_variable>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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33 </action>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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34 </actions>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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35 </install>
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36 </package>
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37 <package name="R" version="3.2.1">
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38 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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39 </package>
45db1f97795c planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit e75f078692e313af3295d2d991fcd8d61270242f
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40 </tool_dependency>