Mercurial > repos > pjbriggs > amplicon_analysis_pipeline

annotate tool_dependencies.xml @ 43:496cc0ddce3d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit a0f1569b4882ca4f9cee613615fe75771bbf0b23
author pjbriggs
date Thu, 05 Dec 2019 13:43:12 +0000
parents 098ad1dd7760
children dac038bd896d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
42
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
1 <?xml version="1.0"?>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
2 <tool_dependency>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
3 <package name="amplicon_analysis_pipeline" version="1.3.5">
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
4 <install version="1.0">
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
5 <actions>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
6 <action type="download_file">https://raw.githubusercontent.com/pjbriggs/Amplicon_analysis-galaxy/update-to-Amplicon_analysis_pipeline-1.3/install_amplicon_analysis-1.3.5.sh</action>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
7 <action type="shell_command">
43
496cc0ddce3d planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit a0f1569b4882ca4f9cee613615fe75771bbf0b23
pjbriggs
parents: 42
diff changeset
8 sh ./install_amplicon_analysis-1.3.5.sh $INSTALL_DIR
42
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
9 </action>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
10 <action type="set_environment">
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
11 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Amplicon_analysis-1.3.5/bin</environment_variable>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
12 </action>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
13 </actions>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
14 </install>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
15 </package>
098ad1dd7760 planemo upload for repository https://github.com/pjbriggs/Amplicon_analysis-galaxy commit 10be6f00106e853a6720e4052871d9d84e027137
pjbriggs
parents:
diff changeset
16 </tool_dependency>