Mercurial > repos > pitagora > sailfish_linux
changeset 8:655e814b3dc3 default tip
commit
| author | pitagora <ryota.yamanaka@riken.jp> |
|---|---|
| date | Tue, 07 Apr 2015 15:56:51 +0900 |
| parents | 87472680c4ce |
| children | |
| files | sailfish_linux.xml tool_dependencies.xml tool_dependency.xml |
| diffstat | 3 files changed, 9 insertions(+), 10 deletions(-) [+] |
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--- a/sailfish_linux.xml Thu Mar 26 17:58:12 2015 +0900 +++ b/sailfish_linux.xml Tue Apr 07 15:56:51 2015 +0900 @@ -1,11 +1,7 @@ - <tool id="sailfish_linux" name="Sailfish" version="0.6.3"> <description>transcript quantification from RNA-seq data</description> <version_command>sailfish -version</version_command> <!-- <expand macro="requirements" /> --> - <requirements> - <requirement type="package" version="0.6.3">sailfish_linux</requirement> - </requirements> <command> <![CDATA[ sailfish quant -i ${filter(lambda x: str(x[0]) == str($index_path), $__app__.tool_data_tables['sailfish_index'].get_fields())[0][-1]} @@ -44,6 +40,9 @@ -o ./ >> $log 2>&1 ]]> </command> + <requirements> + <requirement type="package" version="0.6.3">sailfish_linux</requirement> + </requirements> <!-- <expand macro="stdio" /> --> <inputs> <param name="index_path" type="select" label="Select a sailfish index">
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Tue Apr 07 15:56:51 2015 +0900 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="sailfish_linux" version="0.6.3"> + <repository changeset_revision="e102aefbd3ea" name="package_sailfish_linux_0_6_3" owner="pitagora" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>
--- a/tool_dependency.xml Thu Mar 26 17:58:12 2015 +0900 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="sailfish_linux" version="0.6.3"> - <repository changeset_revision="e102aefbd3ea" name="package_sailfish_linux_0_6_3" owner="pitagora" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> -</tool_dependency>