# HG changeset patch
# User pitagora <ryota.yamanaka@riken.jp>
# Date 1428389811 -32400
# Node ID 655e814b3dc387f63c4f3f738015e0fdbceec2d4
# Parent  87472680c4cecb85be3af860282a5b00c62556ee
commit

diff -r 87472680c4ce -r 655e814b3dc3 sailfish_linux.xml
--- a/sailfish_linux.xml	Thu Mar 26 17:58:12 2015 +0900
+++ b/sailfish_linux.xml	Tue Apr 07 15:56:51 2015 +0900
@@ -1,11 +1,7 @@
-
 <tool id="sailfish_linux" name="Sailfish" version="0.6.3">
     <description>transcript quantification from RNA-seq data</description>
     <version_command>sailfish -version</version_command>
     <!-- <expand macro="requirements" /> -->
-    <requirements>
-        <requirement type="package" version="0.6.3">sailfish_linux</requirement>
-    </requirements>
     <command>
 <![CDATA[
         sailfish quant -i ${filter(lambda x: str(x[0]) == str($index_path), $__app__.tool_data_tables['sailfish_index'].get_fields())[0][-1]}
@@ -44,6 +40,9 @@
          -o ./ >> $log 2>&1
 ]]>
     </command>
+    <requirements>
+        <requirement type="package" version="0.6.3">sailfish_linux</requirement>
+    </requirements>
     <!-- <expand macro="stdio" /> -->
     <inputs>
         <param name="index_path" type="select" label="Select a sailfish index">
diff -r 87472680c4ce -r 655e814b3dc3 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Apr 07 15:56:51 2015 +0900
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="sailfish_linux" version="0.6.3">
+    <repository changeset_revision="e102aefbd3ea" name="package_sailfish_linux_0_6_3" owner="pitagora" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+  </package>
+</tool_dependency>
diff -r 87472680c4ce -r 655e814b3dc3 tool_dependency.xml
--- a/tool_dependency.xml	Thu Mar 26 17:58:12 2015 +0900
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-  <package name="sailfish_linux" version="0.6.3">
-    <repository changeset_revision="e102aefbd3ea" name="package_sailfish_linux_0_6_3" owner="pitagora" prior_installation_required="False" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-  </package>
-</tool_dependency>