Mercurial > repos > pitagora > sailfish_linux

changeset 2:d474f67ae32f

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commit
author pitagora <ryota.yamanaka@riken.jp>
date Thu, 26 Mar 2015 13:28:06 +0900
parents 0283d2d3f8d6
children fee43e600565
files sailfish_linux.xml tool_data_table_conf.xml
diffstat 2 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/sailfish_linux.xml	Thu Mar 26 13:18:34 2015 +0900
+++ b/sailfish_linux.xml	Thu Mar 26 13:28:06 2015 +0900
@@ -8,7 +8,7 @@
     </requirements>
     <command>
 <![CDATA[
-        sailfish quant -i ${filter(lambda x: str(x[0]) == str($index_path), $__app__.tool_data_tables['sailfish_custom_indexes'].get_fields())[0][-1]}
+        sailfish quant -i ${filter(lambda x: str(x[0]) == str($index_path), $__app__.tool_data_tables['sailfish_index'].get_fields())[0][-1]}
             #if $single_or_paired.single_or_paired_opts == 'single':
                 -l "T=SE"
                 -r $single_or_paired.input_singles
@@ -47,7 +47,7 @@
     <!-- <expand macro="stdio" /> -->
     <inputs>
         <param name="index_path" type="select" label="Select a sailfish index">
-            <options from_data_table="sailfish_custom_indexes">
+            <options from_data_table="sailfish_index">
                 <validator type="no_options" message="No index are available"/>
             </options>
         </param>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_data_table_conf.xml	Thu Mar 26 13:28:06 2015 +0900
@@ -0,0 +1,6 @@
+<tables>
+    <table name="sailfish_index" comment_char="#">
+        <columns>value, dbkey, name, path</columns>
+        <file path="tool-data/sailfish_index.loc" />
+    </table>
+</tables>