Mercurial > repos > pitagora > package_gatk_1_6_13

changeset 0:40c83f2cee71

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commit
author pitagora <ryota.yamanaka@riken.jp>
date Thu, 09 Apr 2015 05:44:47 +0900
parents
children d925f67b8cf3
files tool_dependencies.xml
diffstat 1 files changed, 15 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Apr 09 05:44:47 2015 +0900
@@ -0,0 +1,15 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="gatk" version="1.6.13">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">ftp://ftp.broadinstitute.org/pub/gsa/GenomeAnalysisTK/GenomeAnalysisTK-1.6-13-g91f02df.tar.bz2</action>
+                <action type="shell_command">cp -r * $INSTALL_DIR/jars</action>
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/jars</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>