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1 #!/usr/bin/perl
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2
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3 # INTERNAL USE ONLY!
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4 # THIS TOOLS IS WRITTEN BASED ON link_path.pl FROM US DOE Joint Genome Institute.
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5 # 2012-02-10 Yamanaka
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6
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7 # THIS TOOL HAS BEEN DEPRECATED IN FAVOR OF THE galaxy_import.pl AND gcpd.pl METHOD
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8 # WHICH DON'T REQUIRE SETTING METADATA MANUALLY FOR EACH FILE.
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9
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10 use strict;
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11 use File::Copy;
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12
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13 # CONFIG
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14 my @allowed_paths = ('/');
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15
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16 # ARGS
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17 my ($src, $dest, $symlink)=@ARGV;
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18 die("Absolute path required\n") unless $src =~ /^\//;
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19 die("Paths containing '..' are disallowed\n") if $src =~ /\/\.\.\//;
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20 my $ok=0;
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21 foreach my $dir (@allowed_paths) {
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22 my $re="^$dir";
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23 $re =~ s/\//\\\//g;
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24 if ($src =~ /$re/) {
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25 $ok=1;
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26 last;
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27 }
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28 }
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29 die("Not an allowed source path\n") unless $ok;
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30
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31 # CP
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32 unlink($dest);
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33 if ($symlink) {
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34 symlink($src, $dest);
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35 } else {
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36 copy($src,$dest);
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37 }
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38 exit;
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