Mercurial > repos > pimarin > data_manager_bakta
changeset 17:ecb7d3d41366 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit e7c35e529ae95a2c9f2ecd87a3716e6866feabfa-dirty
| author | pimarin |
|---|---|
| date | Fri, 04 Nov 2022 15:56:27 +0000 |
| parents | 718080c30a76 |
| children | 04bee0f935a2 |
| files | data_manager/bakta_build_database.py data_manager/bakta_build_database.xml data_manager/macro.xml |
| diffstat | 3 files changed, 6 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/bakta_build_database.py Fri Nov 04 15:46:06 2022 +0000 +++ b/data_manager/bakta_build_database.py Fri Nov 04 15:56:27 2022 +0000 @@ -3,10 +3,16 @@ import json import os import sys +import subprocess import tarfile from datetime import datetime from pathlib import Path + +# implement pip as a subprocess: +subprocess.check_call([sys.executable, '-m', 'pip', 'install', +'requests']) + import requests
--- a/data_manager/bakta_build_database.xml Fri Nov 04 15:46:06 2022 +0000 +++ b/data_manager/bakta_build_database.xml Fri Nov 04 15:56:27 2022 +0000 @@ -4,7 +4,6 @@ <import>macro.xml</import> </macros> <expand macro="requirements"/> - <command detect_errors="exit_code"> <![CDATA[ python '$__tool_directory__/bakta_build_database.py'
--- a/data_manager/macro.xml Fri Nov 04 15:46:06 2022 +0000 +++ b/data_manager/macro.xml Fri Nov 04 15:56:27 2022 +0000 @@ -1,13 +1,11 @@ <macros> <token name="@TOOL_VERSION@">1.5.1</token> <token name="@PYTHON_VERSION@">3.8</token> - <token name="@REQUESTS_VERSION@">2.28.1</token> <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.05</token> <xml name="requirements"> <requirements>w <requirement type="package" version="@PYTHON_VERSION@">python</requirement> - <requirement type="package" version="@REQUESTS_VERSION@">requests</requirement> </requirements> </xml> </macros>