Mercurial > repos > pimarin > data_manager_bakta
changeset 7:47a3aac8fcf7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit 4e0fa611488db8c2c30a5f332eef86fcf24c13af-dirty
author | pimarin |
---|---|
date | Thu, 27 Oct 2022 15:21:45 +0000 |
parents | 3b9969001f3f |
children | a1cd2e86adbf |
files | data_manager/bakta_build_database.xml |
diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/bakta_build_database.xml Thu Oct 27 15:07:44 2022 +0000 +++ b/data_manager/bakta_build_database.xml Thu Oct 27 15:21:45 2022 +0000 @@ -8,8 +8,8 @@ <expand macro="version_command"/> <command detect_errors="aggressive"><![CDATA[ - mkdir 'output_file' && - ln -s '$output_file' 'output_file/json_output' && + mkdir './output_dir_json' && + ln -s '$output_file' './output_dir_json/json_output.json' && python '$__tool_directory__/bakta_build_database.py' './output_file/json_output' --database_version '$database_select' @@ -26,7 +26,7 @@ </param> </inputs> <outputs> - <data name="output_file" format="data_manager_json" from_work_dir="output_file/json_output"/> + <data name="output_file" format="data_manager_json" from_work_dir="./output_dir_json/json_output.json"/> </outputs> <tests> <!-- Test download -->