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annotate test-data/TEST_1/TEST_1.gff3 @ 10:ed4bc0577be6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 274e2f6740711cf7709d44951b9ff70c199d5be7
author pimarin
date Mon, 23 Jan 2023 16:41:16 +0000
parents 8c7499c6f32a
children
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44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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1 ##gff-version 3
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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2 ##feature-ontology https://github.com/The-Sequence-Ontology/SO-Ontologies/blob/v3.1/so.obo
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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3 # Annotated with Bakta
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ed4bc0577be6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit 274e2f6740711cf7709d44951b9ff70c199d5be7
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4 # Software: v1.6.1
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44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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5 # Database: v4.0
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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6 # DOI: 10.1099/mgen.0.000685
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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7 # URL: github.com/oschwengers/bakta
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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8 ##sequence-region contig_1 1 1330
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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9 contig_1 Bakta region 1 1330 . + . ID=contig_1;Name=contig_1;Is_circular=true
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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10 contig_1 Prodigal CDS 413 736 . + 0 ID=IHHALP_00005;Name=hypothetical protein;locus_tag=IHHALP_00005;product=hypothetical protein
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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11 contig_1 Prodigal CDS 971 1471 . - 0 ID=IHHALP_00010;Name=hypothetical protein;locus_tag=IHHALP_00010;product=hypothetical protein
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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12 ##FASTA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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13 >contig_1
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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14 TTCTTCTGCGAGTTCGTGCAGCTTCTCACACATGGTGGCCTGCTCGTCAGCATCGAGTGC
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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15 GTCCAGTTTTTCGAGCAGCGTCAGGCTCTGGCTTTTTATGAATCCCGCCATGTTGAGTGC
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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16 AGTTTGCTGCTGCTTGTTCATCTTTCTGTTTTCTCCGTTCTGTCTGTCATCTGCGTCGTG
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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17 TGATTATATCGCGCACCACTTTTCGACCGTCTTACCGCCGGTATTCTGCCGACGGACATT
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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18 TCAGTCAGACAACACTGTCACTGCCAAAAAACAGCAGTGCTTTGTTGGTAATTCGAACTT
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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19 GCAGACAGGACAGGATGTGCAATTGTTATACCGCGCATACATGCACGCTATTACAATTAC
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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20 CCTGGTCAGGGCTTCGCCCCGACACCCCATGTCAGATACGGAGCCATGTTTTATGACAAA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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21 ACGAAGTGGAAGTAATACGCGCAGGCGGGCTATCAGTCGCCCTGTTCGTCTGACGGCAGA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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22 AGAAGACCAGGAAATCAGAAAAAGGGCTGCTGAATGCGGCAAGACCGTTTCTGGTTTTTT
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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23 ACGGGCGGCAGCTCTCGGTAAGAAAGTTAACTCACTGACTGATGACCGGGTGCTGAAAGA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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24 AGTTATGCGACTGGGGGCGTTGCAGAAAAAACTCTTTATCGACGGCAAGCGTGTCGGGGA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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25 CAGAGAGTATGCGGAGGTGCTGATCGCTATTACGGAGTATCACCGTGCCCTGTTATCCAG
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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26 GCTTATGGCAGATTAGCTTCCCGGAGAGAAACTGTCGAAAACAGACGGTATGAACGCCGT
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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27 AAGCCCCCAAACCGATCGCCATTCACTTTCATGCATAGCTATGCAGTGAGCTGAAAGCGA
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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28 TCCTGACGCATTTTTCCGGTTTACCCCGGGGAAAACATCTCTTTTTGCGGTGTCTGCGTC
44fb905481f0 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/bakta commit a7dcdae8bccb5a8d7abdb9c6d058f9bd7c6f6c15
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29 AGAATCGCGTTCAGCGCGTTTTGGCGGTGCGCGTAATGAGACGTTATGGTAAATGTCTTC
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30 TGGCTTGATATTATATTGGAATGCCTTTTTTCAAAGCAAATGATGTGGCTTTGGATAGAA
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31 GGTTTACGTTGATCTTATCAAAGTTTTTTTTAAAGAACGAAGCCGAGAGCTCAGATAAAT
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32 CATTATATTCATCAGTTTTCGTAACTTTGTTTAATGTGTAACTTGAAAACTTCTCGCCAT
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33 TAAATGACGTATAGACGTAACGATCTTTTTTTCCACCGTTAGGAATTATTAAATCAAAAA
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34 AAACATCACCCTTGCTTTTCTTTTTCTTCAAGTCGGATTCGATTTTTGAGAAAAATTCGC
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35 TCGGGCTATAAATATCAGTAGCATAGACAATAAATAAAGTTTTATCTTTATTTTTTATTG
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36 CTTCTATTTG