Mercurial > repos > pimarin > abromics_extractor_summarize

annotate test-data/quast/quast_result.tsv @ 0:35704a6837a7 draft

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planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
author pimarin
date Sun, 04 Jun 2023 17:15:36 +0000
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35704a6837a7 planemo upload commit bb69b191fe3ce756655bf90af4d69e4472f94ba9-dirty
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1 Assembly 10_Enterococcus_faecalis_S17_L001
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2 # contigs (>= 0 bp) 100
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3 # contigs (>= 1000 bp) 58
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4 # contigs (>= 5000 bp) 48
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5 # contigs (>= 10000 bp) 41
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6 # contigs (>= 25000 bp) 28
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7 # contigs (>= 50000 bp) 20
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8 Total length (>= 0 bp) 3027634
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9 Total length (>= 1000 bp) 3015201
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10 Total length (>= 5000 bp) 2996428
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11 Total length (>= 10000 bp) 2944723
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12 Total length (>= 25000 bp) 2735277
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13 Total length (>= 50000 bp) 2421445
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14 # contigs 62
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15 Largest contig 436224
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16 Total length 3017519
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17 GC (%) 37.31
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18 N50 99915
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19 N90 27780
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20 auN 154096.4
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21 L50 8
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22 L90 28
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23 # total reads 3489582
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24 # left 1744791
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25 # right 1744791
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26 Mapped (%) 99.85
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27 Properly paired (%) 98.83
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28 Avg. coverage depth 230
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29 Coverage >= 1x (%) 100.0
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30 # N's per 100 kbp 0.00