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changeset 2:287578a9c33a draft

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Uploaded
author petr-novak
date Wed, 03 Jul 2019 02:23:49 -0400
parents d81aaa9f2078
children 14827df84f32
files tmp/multifasta.gff3 tmp/multifasta_win.gff3 tmp/single_fasta.gff3 tmp/single_fasta_filtered.gff3 tool-data/blosum80.txt tool-data/blosum80.txt.sample tool-data/rexdb_versions.loc tool-data/rexdb_versions.loc.sample tool-data/select_domain.loc tool-data/select_domain.loc.sample
diffstat 10 files changed, 222 insertions(+), 47 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tmp/multifasta.gff3	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,58 @@
+##gff-version 3
+##-----------------------------------------------
+##PIPELINE VERSION         : dante-rv-3081(adb2509)
+##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb
+##-----------------------------------------------
+Acoerulea195_58_rc	dante	protein_domain	1753	1956	368	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-PROT__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:1753-1956[100percent];Best_Hit_DB_Pos=1:68of68;DB_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Query_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	2140	2742	1162	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-INT__REXdb_ID3979|Class_I|LTR|Ty1/copia|SIRE:2140-2742[100percent];Best_Hit_DB_Pos=1:201of201;DB_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Query_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	2815	2958	128	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID4340|Class_I|LTR|Ty1/copia|SIRE:2815-2958[100percent];Best_Hit_DB_Pos=1:48of256;DB_Seq=HFHIFGIPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR;Query_Seq=YMRVFGSVCYVCKDRQSLSKFDSRGEVALLLGYSSNSRAFRVFNYTTR;Identity=0.46;Similarity=0.65;Relat_Length=0.188;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19
+Acoerulea195_58_rc	dante	protein_domain	3268	4199	1404	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID3881|Class_I|LTR|Ty1/copia|SIRE:3433-4199[82percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT-FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Query_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT/FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	4260	4346	90	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4260-4346[100percent];Best_Hit_DB_Pos=12:40of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQ;Query_Seq=YRSMIGSLLYLTASRPDISYSVGVCARFQ;Identity=0.55;Similarity=0.83;Relat_Length=0.216;Relat_Interruptions=0.0;Hit_to_DB_Length=0.22
+Acoerulea195_58_rc	dante	protein_domain	4467	4844	733	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RH__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:4467-4844[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Query_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	1161	1367	391	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1161-1367[100percent];Best_Hit_DB_Pos=1:69of69;DB_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Query_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	1572	2195	1035	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1584-2123[86percent];Best_Hit_DB_Pos=1:180of180;DB_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKTxFGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Query_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKT*FGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	2856	3620	1393	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:2856-3619[99percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN-HKVDGSVERYKARLVAKGFTxRExFDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLKxASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Query_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN/YKVDGSVERYKARLVAKGFT*RE*FDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLK*ASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.33;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	3914	4294	717	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:3914-4294[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Query_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	560	829	471	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-GAG__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:560-829[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Query_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	1250	1465	402	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-PROT__REXdb_ID5202|Class_I|LTR|Ty1/copia|Tork:1250-1465[100percent];Best_Hit_DB_Pos=1:72of72;DB_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Query_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	1637	2230	1123	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-INT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:1637-2230[100percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Query_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	2777	3549	1427	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:2777-3549[100percent];Best_Hit_DB_Pos=1:258of258;DB_Seq=WELAMKDEMTSLQKNKTW-WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Query_Seq=WELAMKDEMTSLQKNKTC/WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	3835	4212	702	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RH__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:3835-4212[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Query_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	3004	3273	486	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-GAG__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:3004-3273[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQTxARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Query_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQT*ARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	3691	3912	417	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-PROT__REXdb_ID1924|Class_I|LTR|Ty1/copia|Angela:3691-3912[100percent];Best_Hit_DB_Pos=1:74of74;DB_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Query_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	4106	4696	1131	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-INT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:4106-4696[100percent];Best_Hit_DB_Pos=1:197of197;DB_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Query_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	5188	5945	1389	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:5188-5945[100percent];Best_Hit_DB_Pos=1:253of253;DB_Seq=WQSAMQSETESMGDNxVWNLVDPP-IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Query_Seq=WQSAMQSETESMGDN*VWNLVDPP/IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	6233	6619	727	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RH__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:6233-6619[100percent];Best_Hit_DB_Pos=1:129of129;DB_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Query_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	1045	1345	527	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1045-1345[100percent];Best_Hit_DB_Pos=1:101of101;DB_Seq=LLGTIEPHLIANLRCFTMAQAMWAY-LRRIYHQDHSAQK-FQLExEINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Query_Seq=LLGTIEPHLIANLRCFTMAQAMWAY/LRRIYHQDHSAQK/IQLE*EINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.02
+Spurpurea289_256_rc	dante	protein_domain	1817	2011	353	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1817-2011[100percent];Best_Hit_DB_Pos=1:65of65;DB_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Query_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	2201	2790	1070	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:2201-2790[100percent];Best_Hit_DB_Pos=1:196of196;DB_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS-SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS-GGxYMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Query_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS\SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS\GG*YMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.01
+Spurpurea289_256_rc	dante	protein_domain	3343	4106	1381	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:3343-4106[100percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQQAMQEEIQALQDNQTWDLMTCP-PGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTLxYFLGLEVxITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Query_Seq=WQQAMQEEIQALQDNQTWDLMTCP/TGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTL*YFLGLEV*ITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	4373	4754	723	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:4373-4754[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DADWAGCADTCRYVTGWCMFF-SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFHxHEITLPHISTEHQTAD;Query_Seq=DADWAGCADTCRYVTGWCMFF\SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFH*HEITLPHISTEHQTAD;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Stuberosum206_200_rc	dante	protein_domain	635	935	264	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:635-935[100percent];Best_Hit_DB_Pos=1:102of102;DB_Seq=IMNAVRPGLLSSVVYASDAR-KVWLDLRERFDTVNGSRIFQLHREIHSLTQGTMSIADYHSKLRDLWDEYDAIMPCPSCPCPESKNFGEHCDYQRLLQFLMGL;Query_Seq=LMSAVSEDLLSGIVYATSAY\RE--DLKERFDKVNRMRIYQLHREINTLSQGTDSVSTY*TKLKNLWGEFDAFVPSPSCACPKSKEYANHLYQLRLIQFLSGL;Identity=0.53;Similarity=0.71;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Stuberosum206_200_rc	dante	protein_domain	1548	1760	189	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:1548-1760[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WIIDTGASHHITSDLGLLDKAREVHAxRDSKVHLPNGKVAAVSHIGSTCVLANQSISNVLFLPDFKFNLLS;Query_Seq=WIIDSGASHHITADKHLLANSRCTTDPHHDKVNLPTGDKATISHIGEIFLFDNETVKDVLCVPDFKFNLLS;Identity=0.52;Similarity=0.66;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Stuberosum206_200_rc	dante	protein_domain	1977	2580	538	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:1977-2559[96percent];Best_Hit_DB_Pos=1:194of194;DB_Seq=HKRLGHAPIDVIKRHESLSYLSNKDQS---HCTVCPISKQTKLPFALSTHKSKAV-FELLHCDLWGPYRVPTHNGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVYTPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILN;Query_Seq=HRRLGHPSSHILKCLDLLH--SNKDVELLNSCLVCPLAKQTRLSFPISNSKT-SV\FELVHMDLWGPYKIPTFDKKHYFLTIVDDYSRYTWIHLLQLKSETIVAIKNFLLMIKNQFGHTIKTVRSDNGTEFFNSQCKELFLNLGISDQSNCPHIPQQNGVVERKHRHILNVARAIRFQACMPLRYWGLCVKATVYLIN;Identity=0.54;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.02
+Stuberosum206_200_rc	dante	protein_domain	3252	3996	798	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:3252-3996[100percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLA-SGEVERFKARLVAKGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSLYGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGELKFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTP;Query_Seq=WIDAMKLEIKALEDNKTWMVVDLRKDKHAVGSKWI-------\NGEVERFKARLVAKGYSQHEGIHYHDTFSPVAKMVTVRCVIALAVSKGWSLYQMDVYNAFLQGDVDEEVYIEMPEGFRTQGTT-KVCKLIKSLYGLKQASRQWNIKLTNTLLSAGFIQSSHDYSLFTLKKPEGMVIILIYVDDLLITGDNEALIKEVNETLHKQFKLKDLGELKYFLGIEVLRSKNGIILNQRKYMLELISNTGLSGAKTTATP;Identity=0.61;Similarity=0.74;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Stuberosum206_200_rc	dante	protein_domain	4084	4200	82	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4084-4200[100percent];Best_Hit_DB_Pos=12:50of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQEIIAQSTAEA;Query_Seq=YQRLVGKLMYATITRPDISYAVQTLSQFMQHPKRSHWEA;Identity=0.49;Similarity=0.64;Relat_Length=0.291;Relat_Interruptions=0.0;Hit_to_DB_Length=0.29
+Stuberosum206_200_rc	dante	protein_domain	4291	4653	479	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:4291-4638[95percent];Best_Hit_DB_Pos=1:116of127;DB_Seq=DSDWGACLETRKSVTGYLVKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHIDIDCHFVRERICQGILQT;Query_Seq=DSDWAACPKTRRSVTGYIVKFGESIVSWKSKKQQTISRSSAEAEYRSMTSAVAEVTWLIGLFKELNVSIQMPITVLSDSKSAIQLAANPVFHERTKHIEIDCHFIRDKVKAGVIQT;Identity=0.68;Similarity=0.88;Relat_Length=0.913;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+Vvinifera145_640	dante	protein_domain	1451	1663	387	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1451-1663[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	1880	2488	1166	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1880-2488[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLVxINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Query_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLV*INIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	3419	4212	1416	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:3428-4212[98percent];Best_Hit_DB_Pos=1:262of262;DB_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFSxRPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYM-MKIPExFKLPEANNTKPRSMYSIKLQRSxYGLKxSGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Query_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFS*RPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYI/MKIPE*FKLPEANNTKPRSMYSIKLQRS*YGLK*SGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.67;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	4507	4908	760	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:4507-4908[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYFSDPHKGRSxIRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Query_Seq=DAGYFSDPHKGRS*IRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	527	859	447	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-GAG__REXdb_ID3008|Class_I|LTR|Ty1/copia|Ivana:581-859[83percent];Best_Hit_DB_Pos=1:93of93;DB_Seq=LFQSIDKSILKTIAQKETPKQLWDSMKVKYQGNARVQRAQLQILRRNFEVLEMKLGESVTNYFARVMLVANDMRNLGENMPDVKIVEKILRTL;Query_Seq=LFHSIDKSILKTITQKETSRQLWESMRIKYQGNARVQRAQLQTLRRDFEVLEMKLGESMTNYFARVMLVANDMRNCGEDMPDVKIVEKILRTL;Identity=0.87;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	1241	1453	312	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-PROT__REXdb_ID3199|Class_I|LTR|Ty1/copia|Ivana:1241-1453[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WFLDSGCSNHMTGDKQWFVHLDETFRHTVKLGNNTKMTVMGKGSIKLRVNGINQVITEVYYLPELKNNLLS;Query_Seq=WFLDSGCSNHMTGNKQWFTELDEGYRHSVKLGNNMKMAVMGKGSIKLQVGEVKQVVSDVYYIPDLKNNLLS;Identity=0.75;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	1646	2281	875	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-INT__REXdb_ID3824|Class_I|LTR|Ty1/copia|Ivana:1646-2245[94percent];Best_Hit_DB_Pos=1:200of200;DB_Seq=HCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAIPKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRTDRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLN;Query_Seq=HQRFGHLSHKGLLTLQCKKLVKGLPQFKSTSRVCTICMIGKQHRDTIPKKSKWRASERLQLIHADICGPVTPTSNSGKRYMLSFIDDYSRKIWVYFLVEKSETFAWFKVFKSLVEKELGLYICCLRTDRGGEFTSKEFNEFCTVHGIKRQLTTAYTPQQNGVAERKNRTIMNMVRCLLTEKKIPKAFWPEAVKWTAHILN;Identity=0.74;Similarity=0.85;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	2849	3641	1121	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RT__REXdb_ID3636|Class_I|LTR|Ty1/copia|Ivana:2864-3633[97percent];Best_Hit_DB_Pos=1:257of257;DB_Seq=WKAAMDLEIDAIVKNRTWDLVDLPMGAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQEHGIDYNEVFAPVARWDTIRMV-LAVAAQKGWMVFQLDVKSAFLHGDLKEAVFVEQPQGYEQEGSKEKVYKLKKALYGLKQAPRAWYSKIENYFLKEGFERCNHESTLFVKTNAGGKVLIISLYVDDLIFTGNDACLIEKFKCSMKSEFEMTDLGKMRYFLGVEVLQSAKGIHLCQKKYANDVLNRFGMKECNPVKNP;Query_Seq=WRSAMDLEIESIIKNKTWELVDLPVGAKRIGVKWVYKTKLNEKGEFDKCKARLVAKGYAQEYGIDYNEVFAPVARWDTIRMG/LALAAQKGWTVFQLDVKSAFLHGELREAVYVDQPLGYIKEGEENKVYKLKKALYGLKQAPRAWYSRIEGYFVKAGFEKCSYEHTLFIKVEGEGKILIVSLYVDDLIFTGNDVCMIENFKSSMMHEFEMTDLGKMKYFLGVEIKQSVEGIHLCQSKYAREVLDRFGMANSNPVRNP;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	3661	3774	114	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:3661-3774[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=EDGGAEVDGTLYKQLVGSLMYLNATRPDLMYVVCLISR;Identity=0.53;Similarity=0.76;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
+Fexcel_5	dante	protein_domain	3901	4281	568	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3539|Class_I|LTR|Ty1/copia|Ivana:3901-4281[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DSDYAGDTEDRRSTSGYVFLLSGGAVAWSSRKQPVVTLSTTEAEYVAAAACACHSIWMKRVLNSLGFSSCKCVKIFCDNSSTIKLSKNPVLHGRTKHIDIKFHFLRDLVKEGVVELVHCGTSEQMAD;Query_Seq=DSDYAGDSDDSRSTSGFAFMLSGGAVSWSSRKQSVVTLSTTEAEYVAAAACACQSIWMQRVFNKLSHTQCKCVTIFCDNSSTIKLSKNPVFHGRSKHINVRFHFLRDLTKDGIVKLEFCGSSEQLAD;Identity=0.76;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	1207	1476	481	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-GAG__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1207-1476[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQxKAIGDSIDEDEFVMTALNGL;Query_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQ*KAIGDSIDEDEFVMTALNGL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	1966	2183	374	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-PROT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1966-2183[100percent];Best_Hit_DB_Pos=1:73of73;DB_Seq=WLIDSGASKHMTRx-ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Query_Seq=WLIDSGASKHMTGK/ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Pabies_54	dante	protein_domain	2370	3035	1130	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-INT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:2370-2963[89percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Query_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	3600	4315	1347	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:3600-4315[100percent];Best_Hit_DB_Pos=1:239of239;DB_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC-HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Query_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC/HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	4343	4456	102	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4343-4456[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=DTSSDLIDATLYRQIIGLLMYLTNTRPNICFAVNTLSQ;Identity=0.53;Similarity=0.68;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
+Pabies_54	dante	protein_domain	4583	4966	675	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RH__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:4583-4966[100percent];Best_Hit_DB_Pos=1:128of128;DB_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLF-DLEMEATTILCDNQSCIKM-XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Query_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLL/DLEMEATTILCDNQSCIKM\XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Identity=0.95;Similarity=0.95;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.02
+Wicker_Bianca_AF521177-1	dante	protein_domain	683	830	86	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID8306|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:683-830[100percent];Best_Hit_DB_Pos=57:105of253;DB_Seq=SAHPHPVSTRPG-REQGGEAPEPNGGLRPPTAGAGPPPACPTVPGAPDPQ;Query_Seq=SHHPHLEHPDQG\EEEGMEAMGSSSSLRPPSPAIPPPPPAPPLPLTPPPE;Identity=0.4;Similarity=0.48;Relat_Length=0.194;Relat_Interruptions=1.0;Hit_to_DB_Length=0.2
+Wicker_Bianca_AF521177-1	dante	protein_domain	2214	2483	350	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-GAG__REXdb_ID2562|Class_I|LTR|Ty1/copia|Bianca:2214-2483[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=LRHHLHPDLKSEYMTEKDPLVLWQSLKDRFDQQGSIVLPQAQHDWITLRFQDYKSVAAYNSALHRIISQLRLCGQKITDAEMIEKTLSTF;Query_Seq=LRHHLHSDLKSEYLMEEDPLVLWNSLKERYDQQRAVMLPEAQREWSLIRFQDFKSVAAYNSAVHKVNSKLRFCNQEISEEDLIEKTLCTF;Identity=0.64;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	3336	3548	307	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2563|Class_I|LTR|Ty1/copia|Bianca:3336-3548[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLVDSCTTNSILRETKYFQTLTKRTGNVLTIAGRDATIVGSGRATITLPMGTQVTIEDALLYPDSTRTLLS;Query_Seq=CLVDSCTSNTILREIKYFQTLTKRKGNIMTIDSRDASIIGSGRATLVLPMGSTIAIEDALLYPQSTRTLLS;Identity=0.76;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	3762	4370	921	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:3762-4370[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGIGMMRKIISNSNGHELNTAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLIQNCNLPTSCWGHAVLHAADLIQ;Query_Seq=HDRLGHPGVGMMTKIIDNSIGHSLPTINFSKLSDFVCTACATGKLIIKPSYLKVKNESLNFLERIQGDICGPIQALSGPFRYFMVLIYASTRWSHVCLLSTRNHAFSQLIDQIIKLRANHPKNRIKTIRMDNAAEFSSRAFNDYCMAMGIHLEHFVPYVHTQNGLAESLIKRVKLVARPLLQNCNLPASCWAHAVLHAADLIQ;Identity=0.77;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	5271	6058	1172	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:5280-6058[98percent];Best_Hit_DB_Pos=1:260of260;DB_Seq=WKEAIKAEIASLTKRGVFTKAIPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKSLYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTGFCIISVYVDDLNIIGSPKDIEEARKHL-KTEFEMKDLGKTKYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTP;Query_Seq=WKEAIEAEVRSLNKREVFSSVIPTPHNVFPVGAKWVFVRKRNENNEVVRYKARLVAQGFTQRPDIDYDDTYSPVMSGITFRYLISLAVQMNLSMQLMDVVTTYLYGSLKSDIYMKVPE*LKMSNPKENRNAYCVKLQKSLYGLKQSGRMWYNRLSEFLIQKGYSNNDDCPCVLIKKSSNGFCIISVYVDDLNIMGSTPDIEEAHNHL/NGEFEMKDLGKTKFCLGLQLEHLPSGILVYQPAYIQKVLENFNMDKSYPTKTP;Identity=0.81;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	6353	6767	384	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2595|Class_I|LTR|Ty1/copia|Bianca:6353-6767[100percent];Best_Hit_DB_Pos=1:133of133;DB_Seq=DAGYLSDPHNARSQSGFVFLHGGTAISWKSSKQTLVATSTNHS-EIISLFEASRECVWLRRMINHIQKSCGIGSIESPTIIYEDNAACVAQMQTRYIKTNI---TKHISPKWFFPHVLQKKGEINIL--QIKSCENLAD;Query_Seq=DXCYLSDPHNVRSQTGFVFLYGGTAFSWKSTKQTLLATSTNHS\ELVAFFEAS*DCVWLRRMINPIQTSCGVGSLGSPTIIYEDNAASPLSQNANVVYVRK*YPHTYILPKVILILSALQKGWRNLIFSQIKSCANLAD;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.05
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tmp/multifasta_win.gff3	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,58 @@
+##gff-version 3
+##-----------------------------------------------
+##PIPELINE VERSION         : dante-rv-3081(adb2509)
+##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb
+##-----------------------------------------------
+Acoerulea195_58_rc	dante	protein_domain	1753	1956	368	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-PROT__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:1753-1956[100percent];Best_Hit_DB_Pos=1:68of68;DB_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Query_Seq=WLLDSGASKHMSGNAKLFSSVTAIDGGSVTFGNGKSSPVIGKGFVAGIGLSPNDVCLLVDGLRVNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	2140	2742	1162	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-INT__REXdb_ID3979|Class_I|LTR|Ty1/copia|SIRE:2140-2742[100percent];Best_Hit_DB_Pos=1:201of201;DB_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Query_Seq=HQRLGHVNFEHLDNLTRNEYIKGVPRLGRNRDTVCGGCQLGKQIRSPHSKKKSITTSSPLELIHMDLMGPTRTPSLGGKRYILVMVDDYTRFTWVSFLREKSDAFLEFQGICLRIQNEKDTQIKHIRSDRGGEFTATGVIEYCIANGTWQEFSAPYTPQQNGVAERKNRVIQEMARAMLHAKDVPTKFWAEVVHTACYIMN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	2815	2958	128	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID4340|Class_I|LTR|Ty1/copia|SIRE:2815-2958[100percent];Best_Hit_DB_Pos=1:48of256;DB_Seq=HFHIFGIPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTR;Query_Seq=YMRVFGSVCYVCKDRQSLSKFDSRGEVALLLGYSSNSRAFRVFNYTTR;Identity=0.46;Similarity=0.65;Relat_Length=0.188;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19
+Acoerulea195_58_rc	dante	protein_domain	3268	4199	1404	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RT__REXdb_ID3881|Class_I|LTR|Ty1/copia|SIRE:3433-4199[82percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT-FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Query_Seq=WLVAMQEELGQFKRSDVWTLVPRPTHTNVVGTKWIFKNKLDEFGQIVRNKARLVAQGYSQIEGIDYGETFAPVARLESVRLLLAMACHLNFKLYQMDVKSAFLNGILNEEVYVEQPKGFVDHT/FPNHVFKLQKALYGLKQAPRAWYERLTSFLLGKGFVRGSVDRTLFILRKNTDVLLAQVYVDDIVFGSTCPSLSESFSQLMSSEFEMSLMGELNFFLGLQVKQFDHGAFISQTKYAKELVKKFGLSTSSGQDTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Acoerulea195_58_rc	dante	protein_domain	4260	4346	90	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4260-4346[100percent];Best_Hit_DB_Pos=12:40of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQ;Query_Seq=YRSMIGSLLYLTASRPDISYSVGVCARFQ;Identity=0.55;Similarity=0.83;Relat_Length=0.216;Relat_Interruptions=0.0;Hit_to_DB_Length=0.22
+Acoerulea195_58_rc	dante	protein_domain	4467	4844	733	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|SIRE;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|SIRE;Best_Hit=Ty1-RH__REXdb_ID3879|Class_I|LTR|Ty1/copia|SIRE:4467-4844[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Query_Seq=DADWGGNLDDRHSTSGGCFYVGNNLVSWHSKKQSSVSISSCEAEYIAAASACTQLLWMRQMLRDYGIQQQAMDLFCDNTSTISISKNPVQHSRTKHIDIRHHFLREAVEKGDIVMEFIPTEHQLAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	1161	1367	391	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1161-1367[100percent];Best_Hit_DB_Pos=1:69of69;DB_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Query_Seq=WIIDTGASDHIVCNQFFFSNIEKLPFPISIQLPNGNTTHVGMTGTVNLSPLITLNNVLYVPSFQFNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	1572	2195	1035	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:1584-2123[86percent];Best_Hit_DB_Pos=1:180of180;DB_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKTxFGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Query_Seq=HQRLGHTTSFPYPQCHICPLVKQTCAPFQTSNTRLDSIFSLVHVDVWGPYHTLNHDGSWFFLTIVDDLSRATWVFLIQSKNQVLSHLRIFLSLSKT*FGKSICRIRTDNGKELFSGECASFFSSNGILHESTCTYTPQQNEVVERKHRHLLELAWALKFQASIPENFWGDCVVTAVYLIN;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	2856	3620	1393	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:2856-3619[99percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN-HKVDGSVERYKARLVAKGFTxRExFDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLKxASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Query_Seq=WQRAMEVELKALIDNHIWDIVSLPPHRKPIGCKWVYKIN/YKVDGSVERYKARLVAKGFT*RE*FDYHETFSSVAKDVTVCSFLSVAAFRNWSMHQMDIHNAFLHGDLEEEIYMDLPQGLRRQGESKVCRLRKSLYGLK*ASRQWYTKFTNALTGAGFKQSKHDYALFTWTKVTSSIYLMIYVDDILIMGNDDSVVRKLKEYLHSSFHIKDLGSPKYFLGIEITRSDQGISLSQRKFVMEIISEAGLSGCKLAVIP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.33;Hit_to_DB_Length=1.0
+Egrandis201_33_rc	dante	protein_domain	3914	4294	717	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID324|Class_I|LTR|Ty1/copia|Ale:3914-4294[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Query_Seq=DLDYATCPMSRRSIIGFCIKFGESLLSWKTKKQSTVSLSSAEAKYRSMAKTVCEVVWLRGLLQDLGIQVRGPTLLFCDNDSAIKLAANPILHERTKHIEVDCHFTREKIKEGIIKTRGIRTTEQPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	560	829	471	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-GAG__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:560-829[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Query_Seq=IRLTLAKSVVFNIVNEKTTAGLMKALSDMYKKPSAANKVYLMRRLFNLKMGEGISVTDHINEFNTILAQLESVQIKFEDEVKALILLSSL;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	1250	1465	402	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-PROT__REXdb_ID5202|Class_I|LTR|Ty1/copia|Tork:1250-1465[100percent];Best_Hit_DB_Pos=1:72of72;DB_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Query_Seq=WIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINIKTSSGSLWTLHNVRHIPALKRNLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	1637	2230	1123	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-INT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:1637-2230[100percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Query_Seq=HQRLGHMSEKGMKLMAAKGKLSSLKHVDVGACEHCILGKQKKVSFSRAGKTLKAEKLELVHTDVWGPAPVESVGNSHYYVTFIDDSTRKVWVYFLKNKSDVFSVFKRWKTKVENQTGLKVKNLKSDNGGEYDSQEFKDFCSEHGIRMIKTIPGTPEQNGVAERMNRTLNERARCMRIQSGLPKAFWAEAINTAAYLIN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	2777	3549	1427	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RT__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:2777-3549[100percent];Best_Hit_DB_Pos=1:258of258;DB_Seq=WELAMKDEMTSLQKNKTW-WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Query_Seq=WELAMKDEMTSLQKNKTC/WSLTEFPEGKKALQNRWVYRLKEESDGRRRYKARLVVKGFQQKQGIDFTEIFSPVVKMTTIRVILSIVAAENLHLEQLDVKTAFLHGDLEEDIYMTQPEGFEVPGKENLVCKLHKSLYGLKQAPRQWYKKFNEFMSNSGFKRCDMDHCCYVKKYTNSYVILVVYVDDMLIAGSSMAEINRLKLQLAENFEMKDLGPAKQILGMRILRNRSEGILKLSQEKYIHKLLDRFYLGDSKTRNTP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Gmax275_361_rc	dante	protein_domain	3835	4212	702	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Tork;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Tork;Best_Hit=Ty1-RH__REXdb_ID5204|Class_I|LTR|Ty1/copia|Tork:3835-4212[100percent];Best_Hit_DB_Pos=1:126of126;DB_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Query_Seq=YADLGGDFDTKKSTTGYIFTLGGTTVSWKSKLQDRVALSTTEAEYIAISEAAKEMIWLKNFLNELGKEQDDAPMFSDSQSAISLAKNPVFHSRCKHIQLRYHFIRELINDGDLSLLKILGSENPAD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	3004	3273	486	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-GAG__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:3004-3273[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQTxARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Query_Seq=MLACMEPELQMQFKTNHEAHDMIVALRDMFQT*ARAERFNVSKAFVESKLAEGAAVGPHVIKMVGYTQRLEKLGFPLGQELATDFILSSL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	3691	3912	417	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-PROT__REXdb_ID1924|Class_I|LTR|Ty1/copia|Angela:3691-3912[100percent];Best_Hit_DB_Pos=1:74of74;DB_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Query_Seq=WVFDTGSVAHICNSMQGMIRSRSVERGEVDFRVGNNARVAALTVGTMQLHLPSGFIMELNNCYFVPSLSRNILS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	4106	4696	1131	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-INT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:4106-4696[100percent];Best_Hit_DB_Pos=1:197of197;DB_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Query_Seq=PCRLGHISEKRMKKLHSDGLLTSFDFESYETCEACLLGKMTKTPFTGFPERAVDLLELVHSDVCGPMSTTARGGFQYFITFTDDFSRYGYVYLMRHKSETFEKFKEFQNEVENQCGKKIKALRSDRGGEYLSHEFSNHLKSCRIVPQLTPPGTPQRNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAAFTLN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	5188	5945	1389	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RT__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:5188-5945[100percent];Best_Hit_DB_Pos=1:253of253;DB_Seq=WQSAMQSETESMGDNxVWNLVDPP-IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Query_Seq=WQSAMQSETESMGDN*VWNLVDPP/IECKWIYKKKKDMDGNVHIYKARLVAKGFQQVQGVDYDETFSPVVMLKSIRIILAIVAYFDYEIWQMDVKIAFLNGNLAEDVYMIQPEGFVDPKNAGKVCKFQRSIYGLKQASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNIPMLESVKTSLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSMEEAKKGFLP;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
+Sitalica164_1034	dante	protein_domain	6233	6619	727	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Angela;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Angela;Best_Hit=Ty1-RH__REXdb_ID1933|Class_I|LTR|Ty1/copia|Angela:6233-6619[100percent];Best_Hit_DB_Pos=1:129of129;DB_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Query_Seq=DASFQTDRDDLKSQSGFVFMLNGGAVSWKSSKQETVANSTTEVEYIAALEAAKEGVWIRNFLIGLGVFPNVSSPLNLYCDNNGAIAQAKEPRNHQKNKHVMRRFHLIRDFVNRGEIKICKIHTDLNISD;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	1045	1345	527	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1045-1345[100percent];Best_Hit_DB_Pos=1:101of101;DB_Seq=LLGTIEPHLIANLRCFTMAQAMWAY-LRRIYHQDHSAQK-FQLExEINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Query_Seq=LLGTIEPHLIANLRCFTMAQAMWAY/LRRIYHQDHSAQK/IQLE*EINSYSQGNLTIEQFYSSFINIWSEYSAIVHAKVPTAALAALQAVHAESQRDQFFMKL;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.02
+Spurpurea289_256_rc	dante	protein_domain	1817	2011	353	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:1817-2011[100percent];Best_Hit_DB_Pos=1:65of65;DB_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Query_Seq=LLVDSGASNHMIDNTTDLHDVHEYDGTQSIQIVNGSTHPITAVGNLDSSIKDVFVSPKLSTSLIS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	2201	2790	1070	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:2201-2790[100percent];Best_Hit_DB_Pos=1:196of196;DB_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS-SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS-GGxYMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Query_Seq=HKKLGHPNSVVLTHLLKHGFLGNNNS\SSFDYAICRLGKSKTLPFPVHGNRASTLFEIVHYDVWGASPVISHGQYRYFVIFINDYSRFTWIYFLHSKAGMFSVFQKFVVLVETQFSTCIKILCSDS\GG*YMSNSFQNYLQQKGIISQRSCPYTPKQNGVAERKNRYLLDVVRALLIDSSVPTKFWVEALSTAVYLIN;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.01
+Spurpurea289_256_rc	dante	protein_domain	3343	4106	1381	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:3343-4106[100percent];Best_Hit_DB_Pos=1:255of255;DB_Seq=WQQAMQEEIQALQDNQTWDLMTCP-PGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTLxYFLGLEVxITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Query_Seq=WQQAMQEEIQALQDNQTWDLMTCP/TGVKLIGCKWVYSVKFRSDGSLDQYKARLVALGNRQEYGIDYEETFALVAKMTIVRTILALATSQEWSLRQMDVKNTFLHGDFKEEIYMSPPSSMFKTPSSEVCQLRRSLYGLKQAPRVWFDKFRSTLLDFHFIQSQFDSSLFLHKTSAGIVLLLVYVDDIVITRSNTELLKHSQKHLQDSFHMKDLGTL*YFLGLEV*ITPTVTLLHQHKYMEEVISLASFQMGNSVLTP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Spurpurea289_256_rc	dante	protein_domain	4373	4754	723	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1014|Class_I|LTR|Ty1/copia|Ale:4373-4754[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DADWAGCADTCRYVTGWCMFF-SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFHxHEITLPHISTEHQTAD;Query_Seq=DADWAGCADTCRYVTGWCMFF\SNTLISWKSKKQDRVSKSSTESEYRAMSSAYSEITWLRGLLGELGFPQLQSTPLHADNTNAIQIAANPVFHERTKHNEVDCHSIRESFH*HEITLPHISTEHQTAD;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Stuberosum206_200_rc	dante	protein_domain	635	935	264	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-GAG__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:635-935[100percent];Best_Hit_DB_Pos=1:102of102;DB_Seq=IMNAVRPGLLSSVVYASDAR-KVWLDLRERFDTVNGSRIFQLHREIHSLTQGTMSIADYHSKLRDLWDEYDAIMPCPSCPCPESKNFGEHCDYQRLLQFLMGL;Query_Seq=LMSAVSEDLLSGIVYATSAY\RE--DLKERFDKVNRMRIYQLHREINTLSQGTDSVSTY*TKLKNLWGEFDAFVPSPSCACPKSKEYANHLYQLRLIQFLSGL;Identity=0.53;Similarity=0.71;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Stuberosum206_200_rc	dante	protein_domain	1548	1760	189	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-PROT__REXdb_ID1200|Class_I|LTR|Ty1/copia|Ale:1548-1760[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WIIDTGASHHITSDLGLLDKAREVHAxRDSKVHLPNGKVAAVSHIGSTCVLANQSISNVLFLPDFKFNLLS;Query_Seq=WIIDSGASHHITADKHLLANSRCTTDPHHDKVNLPTGDKATISHIGEIFLFDNETVKDVLCVPDFKFNLLS;Identity=0.52;Similarity=0.66;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Stuberosum206_200_rc	dante	protein_domain	1977	2580	538	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-INT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:1977-2559[96percent];Best_Hit_DB_Pos=1:194of194;DB_Seq=HKRLGHAPIDVIKRHESLSYLSNKDQS---HCTVCPISKQTKLPFALSTHKSKAV-FELLHCDLWGPYRVPTHNGKRFFVTIVDDYSRYTWIFLVTSKVDTIVVIKHFLLQVQNVFSTTVKTFRTDNGCEFFSKDFQNLMCEMGIIHQSTCVYTPQQNGIAERKHRTILAVARSLRFQASIPLRYWGECVTTAVYILN;Query_Seq=HRRLGHPSSHILKCLDLLH--SNKDVELLNSCLVCPLAKQTRLSFPISNSKT-SV\FELVHMDLWGPYKIPTFDKKHYFLTIVDDYSRYTWIHLLQLKSETIVAIKNFLLMIKNQFGHTIKTVRSDNGTEFFNSQCKELFLNLGISDQSNCPHIPQQNGVVERKHRHILNVARAIRFQACMPLRYWGLCVKATVYLIN;Identity=0.54;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.02
+Stuberosum206_200_rc	dante	protein_domain	3252	3996	798	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RT__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:3252-3996[100percent];Best_Hit_DB_Pos=1:256of256;DB_Seq=WVKAMELEIAALESNKTWSIVDLPPGKKPIGCKWIYKIKFLA-SGEVERFKARLVAKGFSQQEGLDYGETFSRVAKMVTVRSVVALAASRGWFIYQMDVHNAFLNGDLHEEVYMVIPNGFARQGECQKVCKLHKSLYGLKQAPRQWNMKLTEALVQMGFKQSHYDYSLFTKQAGDAVVVILVYVDDLLITGSSHELLCRTRQDIQKRFKMKDLGELKFFLGIEFSRSSKGILMTQRKYALELVSETGLGGAKPVHTP;Query_Seq=WIDAMKLEIKALEDNKTWMVVDLRKDKHAVGSKWI-------\NGEVERFKARLVAKGYSQHEGIHYHDTFSPVAKMVTVRCVIALAVSKGWSLYQMDVYNAFLQGDVDEEVYIEMPEGFRTQGTT-KVCKLIKSLYGLKQASRQWNIKLTNTLLSAGFIQSSHDYSLFTLKKPEGMVIILIYVDDLLITGDNEALIKEVNETLHKQFKLKDLGELKYFLGIEVLRSKNGIILNQRKYMLELISNTGLSGAKTTATP;Identity=0.61;Similarity=0.74;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Stuberosum206_200_rc	dante	protein_domain	4084	4200	82	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4084-4200[100percent];Best_Hit_DB_Pos=12:50of134;DB_Seq=YRSLIGCLMYLTATRPDIMHAVSLLSKKQEIIAQSTAEA;Query_Seq=YQRLVGKLMYATITRPDISYAVQTLSQFMQHPKRSHWEA;Identity=0.49;Similarity=0.64;Relat_Length=0.291;Relat_Interruptions=0.0;Hit_to_DB_Length=0.29
+Stuberosum206_200_rc	dante	protein_domain	4291	4653	479	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ale;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ale;Best_Hit=Ty1-RH__REXdb_ID1202|Class_I|LTR|Ty1/copia|Ale:4291-4638[95percent];Best_Hit_DB_Pos=1:116of127;DB_Seq=DSDWGACLETRKSVTGYLVKFGGGLISWKSKKQGTVSRSSAEAEFRSMAACAAEVTWLIGLYKELGVSLTLPIKMVCDSKAAIQIAANPIFHERTKHIDIDCHFVRERICQGILQT;Query_Seq=DSDWAACPKTRRSVTGYIVKFGESIVSWKSKKQQTISRSSAEAEYRSMTSAVAEVTWLIGLFKELNVSIQMPITVLSDSKSAIQLAANPVFHERTKHIEIDCHFIRDKVKAGVIQT;Identity=0.68;Similarity=0.88;Relat_Length=0.913;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+Vvinifera145_640	dante	protein_domain	1451	1663	387	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1451-1663[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLADCATTHTILQDKRYFLELTLIKANVSNIYGTTNLVEGSGRANITLSNGTRFHINDALYSSKSRRNLLS;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	1880	2488	1166	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:1880-2488[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLVxINIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Query_Seq=HDRLGHPGSSMMRRIIEHSHGHPLKNQKILSPNEYSCAACLQGKLIIRPSFTKVISESPIFLERIHGDICGPIHPPCGPFRYFMILIDASTRWSHVCLLSTRNVAFARLLAQIIRLRAQFPDYPIKTIRLDNVGEFTSQTFIDYCMLV*INIEHPVAHTHTQNGLAESFIKRLQLIARPLLMKTKLPTSAWGHAIMHTAVLVR;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	3419	4212	1416	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:3428-4212[98percent];Best_Hit_DB_Pos=1:262of262;DB_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFSxRPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYM-MKIPExFKLPEANNTKPRSMYSIKLQRSxYGLKxSGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Query_Seq=WKEAIHAELNSLTKREVFGPVVQTPEDVKPVGCKWVFVRKRNENNEIIRYKAQLVAQGFS*RPGIDYEETYSPVMDAITFRFLISLAVSERLDIRLMDVITTYLYGSMDNDIYI/MKIPE*FKLPEANNTKPRSMYSIKLQRS*YGLK*SGRMWYNRLSEYLLKEGYVNNPICPCIFIKSEMGFAIIIVYVDDLNLVGTLEELTRTTNYLKKEFETKDLGKTKSCLGLQIEHFPNGVLVHQSTFIKKVLKCFYMDKAHHLSSP;Identity=0.98;Similarity=0.98;Relat_Length=1.0;Relat_Interruptions=1.67;Hit_to_DB_Length=1.0
+Vvinifera145_640	dante	protein_domain	4507	4908	760	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2615|Class_I|LTR|Ty1/copia|Bianca:4507-4908[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYFSDPHKGRSxIRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Query_Seq=DAGYFSDPHKGRS*IRYVFNCNGTAISWRSVKQTMVVTSSNHSEILAIHEASRECIWLRSMIQHIRESCGLSSIKGDPTILFEDNVACIAQIAEGYIKGDRTKHISPKFFYTHELQKSGEIDVQQIRSSDNLAD;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=0.5;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	527	859	447	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-GAG__REXdb_ID3008|Class_I|LTR|Ty1/copia|Ivana:581-859[83percent];Best_Hit_DB_Pos=1:93of93;DB_Seq=LFQSIDKSILKTIAQKETPKQLWDSMKVKYQGNARVQRAQLQILRRNFEVLEMKLGESVTNYFARVMLVANDMRNLGENMPDVKIVEKILRTL;Query_Seq=LFHSIDKSILKTITQKETSRQLWESMRIKYQGNARVQRAQLQTLRRDFEVLEMKLGESMTNYFARVMLVANDMRNCGEDMPDVKIVEKILRTL;Identity=0.87;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	1241	1453	312	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-PROT__REXdb_ID3199|Class_I|LTR|Ty1/copia|Ivana:1241-1453[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=WFLDSGCSNHMTGDKQWFVHLDETFRHTVKLGNNTKMTVMGKGSIKLRVNGINQVITEVYYLPELKNNLLS;Query_Seq=WFLDSGCSNHMTGNKQWFTELDEGYRHSVKLGNNMKMAVMGKGSIKLQVGEVKQVVSDVYYIPDLKNNLLS;Identity=0.75;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	1646	2281	875	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-INT__REXdb_ID3824|Class_I|LTR|Ty1/copia|Ivana:1646-2245[94percent];Best_Hit_DB_Pos=1:200of200;DB_Seq=HCRYGHLSFKGLRTLQYKKMVRGLPQLKASSKVCTDCMVGKQHRDAIPKRSLWRASQRLQLVHADICEPIKPVSNSKKRYLISFIDDYSRKVWIYFLTEKSEAFTTFKNYKNLVEKETGAFICCLRTDRGGEFTSLEFNAFCKTNGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPKNFWPEAVNWTAHVLN;Query_Seq=HQRFGHLSHKGLLTLQCKKLVKGLPQFKSTSRVCTICMIGKQHRDTIPKKSKWRASERLQLIHADICGPVTPTSNSGKRYMLSFIDDYSRKIWVYFLVEKSETFAWFKVFKSLVEKELGLYICCLRTDRGGEFTSKEFNEFCTVHGIKRQLTTAYTPQQNGVAERKNRTIMNMVRCLLTEKKIPKAFWPEAVKWTAHILN;Identity=0.74;Similarity=0.85;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	2849	3641	1121	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RT__REXdb_ID3636|Class_I|LTR|Ty1/copia|Ivana:2864-3633[97percent];Best_Hit_DB_Pos=1:257of257;DB_Seq=WKAAMDLEIDAIVKNRTWDLVDLPMGAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQEHGIDYNEVFAPVARWDTIRMV-LAVAAQKGWMVFQLDVKSAFLHGDLKEAVFVEQPQGYEQEGSKEKVYKLKKALYGLKQAPRAWYSKIENYFLKEGFERCNHESTLFVKTNAGGKVLIISLYVDDLIFTGNDACLIEKFKCSMKSEFEMTDLGKMRYFLGVEVLQSAKGIHLCQKKYANDVLNRFGMKECNPVKNP;Query_Seq=WRSAMDLEIESIIKNKTWELVDLPVGAKRIGVKWVYKTKLNEKGEFDKCKARLVAKGYAQEYGIDYNEVFAPVARWDTIRMG/LALAAQKGWTVFQLDVKSAFLHGELREAVYVDQPLGYIKEGEENKVYKLKKALYGLKQAPRAWYSRIEGYFVKAGFEKCSYEHTLFIKVEGEGKILIVSLYVDDLIFTGNDVCMIENFKSSMMHEFEMTDLGKMKYFLGVEIKQSVEGIHLCQSKYAREVLDRFGMANSNPVRNP;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Fexcel_5	dante	protein_domain	3661	3774	114	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:3661-3774[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=EDGGAEVDGTLYKQLVGSLMYLNATRPDLMYVVCLISR;Identity=0.53;Similarity=0.76;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
+Fexcel_5	dante	protein_domain	3901	4281	568	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3539|Class_I|LTR|Ty1/copia|Ivana:3901-4281[100percent];Best_Hit_DB_Pos=1:127of127;DB_Seq=DSDYAGDTEDRRSTSGYVFLLSGGAVAWSSRKQPVVTLSTTEAEYVAAAACACHSIWMKRVLNSLGFSSCKCVKIFCDNSSTIKLSKNPVLHGRTKHIDIKFHFLRDLVKEGVVELVHCGTSEQMAD;Query_Seq=DSDYAGDSDDSRSTSGFAFMLSGGAVSWSSRKQSVVTLSTTEAEYVAAAACACQSIWMQRVFNKLSHTQCKCVTIFCDNSSTIKLSKNPVFHGRSKHINVRFHFLRDLTKDGIVKLEFCGSSEQLAD;Identity=0.76;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	1207	1476	481	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-GAG__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1207-1476[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQxKAIGDSIDEDEFVMTALNGL;Query_Seq=IADSINDHLIPCVSSKNTLKEMFDSLSKLYEGKNINRKMNLRSQLKNTKMQKGETIQEYFSRISEIKKQ*KAIGDSIDEDEFVMTALNGL;Identity=0.99;Similarity=0.99;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	1966	2183	374	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-PROT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:1966-2183[100percent];Best_Hit_DB_Pos=1:73of73;DB_Seq=WLIDSGASKHMTRx-ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Query_Seq=WLIDSGASKHMTGK/ESTLSCISENKFSQKVTLGDDYQYPIKGVGESNYKLDSENSIKMKDVLYVPGLKKNLLS;Identity=0.96;Similarity=0.96;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.01
+Pabies_54	dante	protein_domain	2370	3035	1130	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-INT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:2370-2963[89percent];Best_Hit_DB_Pos=1:198of198;DB_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Query_Seq=HRRLAHINYKALPYICKVVTGLPELKVDQEGICNGCAQGKNIKNPFPKRDSKAEGVLELIHSDVCGPMPSSSISGYVYYVSFIDDYSRKTWIYFLKSKDEVFSKFKEFKALIENLSERKIKILRSDNGGAYTSKEFVNFCRDVGINKELTTPYNPQQNGVAERKNRTIMEVVKTMIHDQDLPMCLWAEAAMAVVYVQN;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	3600	4315	1347	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RT__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:3600-4315[100percent];Best_Hit_DB_Pos=1:239of239;DB_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC-HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Query_Seq=WADAMTEEYQSIIKNDVWQIVPKPKSKDMVSSKWLFKIKHAADGSIEKYKARFVPRGFSQKEGIDYEETFAPVARYTSIRTIIALAAKMKWKLHQMYVKTTFLNGVIEEEVYIEQPQGFEVEDRKSHVCRLKKALYRLKQAPRAWYGRIDSFLTSLGFTKSKVDSNLYFKIMNDEPVILLLYVDDLFLTREEKIITEC/HYFLGLEVWQSPERIFLNQGKYTVEILKRFDMLECKPMNTP;Identity=1.0;Similarity=1.0;Relat_Length=1.0;Relat_Interruptions=0.33;Hit_to_DB_Length=1.0
+Pabies_54	dante	protein_domain	4343	4456	102	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Ivana;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Ivana;Best_Hit=Ty1-RH__REXdb_ID3204|Class_I|LTR|Ty1/copia|Ivana:4343-4456[100percent];Best_Hit_DB_Pos=1:38of134;DB_Seq=DDGADKVDEAIYRSLIGCLMYLTATRPDIMHAVSLLSK;Query_Seq=DTSSDLIDATLYRQIIGLLMYLTNTRPNICFAVNTLSQ;Identity=0.53;Similarity=0.68;Relat_Length=0.284;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
+Pabies_54	dante	protein_domain	4583	4966	675	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Gymco-II;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Gymco-II;Best_Hit=Ty1-RH__REXdb_ID2667|Class_I|LTR|Ty1/copia|Gymco-II:4583-4966[100percent];Best_Hit_DB_Pos=1:128of128;DB_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLF-DLEMEATTILCDNQSCIKM-XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Query_Seq=DSDWAGSVADRKSTSGCCFSLGSAMISWQSRKQSSVALSIAEAEYIVACSASCEAIWLRKLLIGLL/DLEMEATTILCDNQSCIKM\XXXNPVFHDRSKHIEIRYHYIRDMVQRGALKLQYISTDEQVAD;Identity=0.95;Similarity=0.95;Relat_Length=1.0;Relat_Interruptions=1.0;Hit_to_DB_Length=1.02
+Wicker_Bianca_AF521177-1	dante	protein_domain	683	830	86	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID8306|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:683-830[100percent];Best_Hit_DB_Pos=57:105of253;DB_Seq=SAHPHPVSTRPG-REQGGEAPEPNGGLRPPTAGAGPPPACPTVPGAPDPQ;Query_Seq=SHHPHLEHPDQG\EEEGMEAMGSSSSLRPPSPAIPPPPPAPPLPLTPPPE;Identity=0.4;Similarity=0.48;Relat_Length=0.194;Relat_Interruptions=1.0;Hit_to_DB_Length=0.2
+Wicker_Bianca_AF521177-1	dante	protein_domain	2214	2483	350	+	.	Name=GAG;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=GAG|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-GAG__REXdb_ID2562|Class_I|LTR|Ty1/copia|Bianca:2214-2483[100percent];Best_Hit_DB_Pos=1:90of90;DB_Seq=LRHHLHPDLKSEYMTEKDPLVLWQSLKDRFDQQGSIVLPQAQHDWITLRFQDYKSVAAYNSALHRIISQLRLCGQKITDAEMIEKTLSTF;Query_Seq=LRHHLHSDLKSEYLMEEDPLVLWNSLKERYDQQRAVMLPEAQREWSLIRFQDFKSVAAYNSAVHKVNSKLRFCNQEISEEDLIEKTLCTF;Identity=0.64;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	3336	3548	307	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2563|Class_I|LTR|Ty1/copia|Bianca:3336-3548[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLVDSCTTNSILRETKYFQTLTKRTGNVLTIAGRDATIVGSGRATITLPMGTQVTIEDALLYPDSTRTLLS;Query_Seq=CLVDSCTSNTILREIKYFQTLTKRKGNIMTIDSRDASIIGSGRATLVLPMGSTIAIEDALLYPQSTRTLLS;Identity=0.76;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	3762	4370	921	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:3762-4370[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HDRLGHPGIGMMRKIISNSNGHELNTAKFPKSSDFMCTSCATGKLILRPSPVKIQNEPLKFLERIQGDICGPIQPTSGPFRYFMVLIDASTRWSHVCLLSTRNHAFAKIIAQLIKLRAHNPEHQIQSIRMDNAAEFSSKAFNDYCMALGIQVQHSVPYVHTQNGLAESLIKRIKLIARPLIQNCNLPTSCWGHAVLHAADLIQ;Query_Seq=HDRLGHPGVGMMTKIIDNSIGHSLPTINFSKLSDFVCTACATGKLIIKPSYLKVKNESLNFLERIQGDICGPIQALSGPFRYFMVLIYASTRWSHVCLLSTRNHAFSQLIDQIIKLRANHPKNRIKTIRMDNAAEFSSRAFNDYCMAMGIHLEHFVPYVHTQNGLAESLIKRVKLVARPLLQNCNLPASCWAHAVLHAADLIQ;Identity=0.77;Similarity=0.89;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	5271	6058	1172	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2589|Class_I|LTR|Ty1/copia|Bianca:5280-6058[98percent];Best_Hit_DB_Pos=1:260of260;DB_Seq=WKEAIKAEIASLTKRGVFTKAIPTPSKVFPVGFKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDYNETYSPVMSGITFRYLISLAVQNHLSMQLMDVVTAYLYGSLDSDIYMKVPDGIQIPNPNANRNMYCVKLQKSLYGLKQSGRMWYNRLSEFLLNKGYTNNDDCPCVFIKKSQTGFCIISVYVDDLNIIGSPKDIEEARKHL-KTEFEMKDLGKTKYCLGLQIEHRPLGILVHQSAYIQKILEKFNMDKSYPNKTP;Query_Seq=WKEAIEAEVRSLNKREVFSSVIPTPHNVFPVGAKWVFVRKRNENNEVVRYKARLVAQGFTQRPDIDYDDTYSPVMSGITFRYLISLAVQMNLSMQLMDVVTTYLYGSLKSDIYMKVPE*LKMSNPKENRNAYCVKLQKSLYGLKQSGRMWYNRLSEFLIQKGYSNNDDCPCVLIKKSSNGFCIISVYVDDLNIMGSTPDIEEAHNHL/NGEFEMKDLGKTKFCLGLQLEHLPSGILVYQPAYIQKVLENFNMDKSYPTKTP;Identity=0.81;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.67;Hit_to_DB_Length=1.0
+Wicker_Bianca_AF521177-1	dante	protein_domain	6353	6767	384	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2595|Class_I|LTR|Ty1/copia|Bianca:6353-6767[100percent];Best_Hit_DB_Pos=1:133of133;DB_Seq=DAGYLSDPHNARSQSGFVFLHGGTAISWKSSKQTLVATSTNHS-EIISLFEASRECVWLRRMINHIQKSCGIGSIESPTIIYEDNAACVAQMQTRYIKTNI---TKHISPKWFFPHVLQKKGEINIL--QIKSCENLAD;Query_Seq=DXCYLSDPHNVRSQTGFVFLYGGTAFSWKSTKQTLLATSTNHS\ELVAFFEAS*DCVWLRRMINPIQTSCGVGSLGSPTIIYEDNAASPLSQNANVVYVRK*YPHTYILPKVILILSALQKGWRNLIFSQIKSCANLAD;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=1.5;Hit_to_DB_Length=1.05
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tmp/single_fasta.gff3	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,26 @@
+##gff-version 3
+##-----------------------------------------------
+##PIPELINE VERSION         : dante-rv-3081(adb2509)
+##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb
+##-----------------------------------------------
+scaffold146.1|size86774	dante	protein_domain	976	1289	293	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:976-1289[100percent];Best_Hit_DB_Pos=26:134of134;DB_Seq=ISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCG-LSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFF-FTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESI-----\IMXXXXXXXXXXXXXXXXXXQLKE*YIKCDRTKHISPKFF\FTQDLQKNGDVIIQQIRSNDNVVD;Identity=0.59;Similarity=0.66;Relat_Length=0.813;Relat_Interruptions=1.5;Hit_to_DB_Length=0.83
+scaffold146.1|size86774	dante	protein_domain	6810	7049	153	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-PROT__REXdb_ID9702|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:6810-7049[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=LVDDGSKVNLLPYRVFQQMGIPEEQLVRDQAPVKGIGGVPVLVEGKVKLALTLGEAPRTRTHYAVFLVVKPPLSYNAILG;Query_Seq=LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTRSEMVEFIIVDMDLAYNAILG;Identity=0.44;Similarity=0.62;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	7656	8296	.	+	.	Name=RT/INT;Final_Classification=Ambiguous_domain;Region_Hits_Classifications_=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[246bp],INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[468bp]
+scaffold146.1|size86774	dante	protein_domain	8756	9241	538	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[486bp],RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[441bp];Best_Hit=Ty3-RT__REXdb_ID8210|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:8801-9241[90percent];Best_Hit_DB_Pos=27:173of173;DB_Seq=DFTDLNKACPKDSFPLPHIDRLVDSTAGNELLTFMDAFSGYNQIMMNPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFDILNKYQMKLNPAKCTFGVPSGEFLGY;Query_Seq=DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTEDGVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCFEVCRTHRLKLNPAKCCFGVRSGKFLGY;Identity=0.63;Similarity=0.8;Relat_Length=0.85;Relat_Interruptions=0.0;Hit_to_DB_Length=0.85
+scaffold146.1|size86774	dante	protein_domain	9433	9781	343	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-RH__REXdb_ID9729|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:9434-9772[97percent];Best_Hit_DB_Pos=1:113of149;DB_Seq=WTEECEEAFQKLKEYLGSPHLLVKPIQGEPLFLYLAVSEHATSSVLVREDDGVQRPIYYTSRALVDAETRYLSLEKIVLALIVSARRLRPYFQAHTIIVLTDQPIRQVLAKPD;Query_Seq=WTDQCDRAFKELKTYLASPPLIVSPTPTETLGLYLAVSEHAVSSVLVAERDGVQHPVYYVSHTLLPAESRYSTVEKFVLALLKSVAKLRHYFESRKVIVYTDQPIKAVLGQSD;Identity=0.58;Similarity=0.73;Relat_Length=0.758;Relat_Interruptions=0.0;Hit_to_DB_Length=0.76
+scaffold146.1|size86774	dante	protein_domain	10810	11667	747	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10819-11667[98percent];Best_Hit_DB_Pos=30:310of310;DB_Seq=RDTHQYVQRCIQCQKFAPLIHKPGEEMTIMSAPCPFAQWGIDLVGPFPQTAGRKKFFIVAVDYFTKWVEAEALSKITEDEVMHFIWKYICCRFGLPRSLVSDNGTQFNGKKIRAWCEEMKITQKFVAVAHPQANGQVESTNRTIVNGLKKRIDELGGSWVDELPSVLWSYRTSAKAATGETPFRLTYGTEAVIPVEVAMDTLRIATF--DEEANDGALRTRLDEIFDLREAAYLHMERSKNLIKARYDQGVRSRSFQIGDLILRRADALKHTGKLEANWEGPY;Query_Seq=RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVAVEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYGIQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGETPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQRALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY;Identity=0.49;Similarity=0.66;Relat_Length=0.906;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+scaffold146.1|size86774	dante	protein_domain	14592	14828	289	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:14592-14828[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPADFYVLKM-GKAENNDCPLLLG;Identity=0.68;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	15420	15995	871	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RT__REXdb_ID6635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:15420-15995[100percent];Best_Hit_DB_Pos=1:192of192;DB_Seq=IYPITDSKWVAPIHVVPKKTGITLVKNKNDELIPTRISSGWRMCVDYRKLNLATRKDHFPLPFMDQMLERLAGKSFYCFLDGYSGYNQIVINPEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDYVERIIEVFMDDFTVYGDSFDKCLENLSLILKRCIETNLVLNYEKCYFMVEQGIVLGH;Query_Seq=IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFPLPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNAPATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKCHFMVRQGIVLGH;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	16188	16634	623	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RH__REXdb_ID6648|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16188-16634[100percent];Best_Hit_DB_Pos=1:149of149;DB_Seq=FNEACKVAFDKLKELLTSAPIIQPPDWSLPFEIMCDASNYVVGAVLGQRVGRAAHVIYYTSRTLDSAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIIFSDHAALRYLLAKKEAKPRLIRWILLLQEFNLEIRDKKGTENLVADHLSR;Query_Seq=FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYASKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLIRWILLLQEFDLEIKDRAGTENAVADNLSR;Identity=0.74;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	24522	24659	149	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:24531-24659[93percent];Best_Hit_DB_Pos=29:71of71;DB_Seq=STISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=STIVCEANIVEGSGRATVVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.65;Similarity=0.77;Relat_Length=0.606;Relat_Interruptions=0.0;Hit_to_DB_Length=0.61
+scaffold146.1|size86774	dante	protein_domain	24873	25481	913	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:24873-25481[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HERLGHPGSIMMRKIIEHSCGHQLKSREILQSNKFSCTSCSQGKLITRPSPTKIGSESLNFLERIHGDICGPIHPPCGPFRYFMVLIDASTRWSHVCLLSTRNQAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQTFNDYCMSIGIDIEHPVAHVHTQNGLAESFIKRIQLIARPLLMRCKLPISTWGHAILHAATLIR;Query_Seq=HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERITFLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHFPDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPLLMKSKLPVTCWGHAIIHASSLIR;Identity=0.75;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	26313	27428	1060	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:26322-27032[63percent];Best_Hit_DB_Pos=1:237of262;DB_Seq=WKDAIKAELYSLNKRKVFGPVVRTPKGVKPVGYKWVFVRKRNENGEIARYKARLVAQGFSQRPGIDFNETYSPVVDATTFRYLISLIAYEGLNLHMMDVVTAYLYGSLDSDIYMKIPEGFNLPDTNSSGSREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLKEGYKNDSVCPCIFMKRSENEFAIIAVYVDDINIIGTPEELPKAIDCLKKEFEMKDLGKTKFCLGLQIEHLNNGIF;Query_Seq=WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFSQRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGFHMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFENEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF;Identity=0.78;Similarity=0.91;Relat_Length=0.905;Relat_Interruptions=0.0;Hit_to_DB_Length=0.9
+scaffold146.1|size86774	dante	protein_domain	27723	28124	581	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:27723-28124[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYLSDPHHGRSQTGYLFTSGNTAISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCGLSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFFFTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRSMIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGEVIIQQIRSSDNVAD;Identity=0.75;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	9780	9956	178	-	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:9783-9956[98percent];Best_Hit_DB_Pos=1:58of310;DB_Seq=HRGGCGEHGGARALIQKLHRAGYYWPGMKRDTHQYVQRCIQCQKFAPLIHKPGEEMTI;Query_Seq=HSGLCGNHPGARSLALRIQRAGYYWPTLLRDAMDCVRRCQSCQYFAPINRKPGAEITL;Identity=0.53;Similarity=0.69;Relat_Length=0.187;Relat_Interruptions=0.0;Hit_to_DB_Length=0.19
+scaffold146.1|size86774	dante	protein_domain	10299	10658	303	-	.	Name=aRH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|TatII[360bp];Best_Hit=Ty3-aRH__REXdb_ID9546|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10299-10658[100percent];Best_Hit_DB_Pos=1:121of121;DB_Seq=WILHVDGASSKQGSGIGIRLQSPYGEVIEQSFCLAFNASNNEAEYESLLAGLRLAVGIGVTKLRAFCNSQLVANQFSGDYEAKDSRMEAYLAQVQELSKKFLSFELARIPRSENSAADSLA;Query_Seq=WNMYIDG-STQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVTRLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA;Identity=0.49;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	10701	10817	136	-	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[99bp],RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[117bp];Best_Hit=Ty3-RH__REXdb_ID8372|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10701-10817[100percent];Best_Hit_DB_Pos=279:317of317;DB_Seq=NREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVVE;Query_Seq=NTDHTSRLAKWAIKVSAMDIAFEPRKAIKGQALADFVVE;Identity=0.64;Similarity=0.77;Relat_Length=0.123;Relat_Interruptions=0.0;Hit_to_DB_Length=0.12
+scaffold146.1|size86774	dante	protein_domain	16797	17666	1057	-	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16812-17666[98percent];Best_Hit_DB_Pos=1:285of313;DB_Seq=HSHSYGGHFGAKRTAHKVLESGFYWPSIFKDAYHFCKSCEKCQRTGNITHKNQMPLTNILVSEIFDVWGIDFMGPFPSSFGNLYILLVVDYVSKWIEAKATRTNDAKVVLDFVRTHIFNRFGIPKAIISDRGTHFCNRSMEALLRKYHVTHRTSTAYHPQTNGQAEISNREIKSILEKIVQPNRRDWSLRLGDALWAYRTAYKSPIGMSPYRMIYGKACHLPVELEHKAFWAIKQCNMDYDAAGIARKLQLQELEEIRNDAYENARIYKEKTKNLHDRMLTRKEF;Query_Seq=HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYILANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTRYGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVVNKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF;Identity=0.61;Similarity=0.79;Relat_Length=0.911;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+scaffold146.1|size86774	dante	protein_domain	18554	18811	306	-	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6693|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:18554-18802[96percent];Best_Hit_DB_Pos=231:313of313;DB_Seq=WALRLLNFDNNACGEKRKLQLQELEEMRLNAYESSRIYKERTKAYHDKKLQRREFQPGQQVLLFNSRLRLFPGKLKSKWSGPF;Query_Seq=WAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKAYHDKKILQQNFREGQQVLLFNSKLRLFPGKLKSRWMGPF;Identity=0.65;Similarity=0.82;Relat_Length=0.265;Relat_Interruptions=0.0;Hit_to_DB_Length=0.27
+scaffold146.1|size86774	dante	protein_domain	19158	19478	197	-	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19182-19448[83percent];Best_Hit_DB_Pos=216:304of314;DB_Seq=YGKPCHLPVELEHKAWWAVKQCNMELDVAGQHRxLQLQELEEIRNDAYESSxIYKEKTKAFHDKQILRKNFEVGQKVLIFHSRLKLFPG;Query_Seq=FGKQCKVLVGMEHENYWEIREMNYEEGADVEQKQMQLQKMDALKLEAYDNSRIDKEKLKAHHAKRILQQNCKKRQQVLIFDSKLKMFPG;Identity=0.42;Similarity=0.71;Relat_Length=0.283;Relat_Interruptions=0.0;Hit_to_DB_Length=0.28
+scaffold146.1|size86774	dante	protein_domain	19976	20212	259	-	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19976-20212[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPADFYVLKM-GEAENDDCPLLLG;Identity=0.62;Similarity=0.79;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	28912	29124	216	-	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:28912-29124[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILRDKRYFLELTLIKANVSTISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tmp/single_fasta_filtered.gff3	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,33 @@
+##gff-version 3
+##-----------------------------------------------
+##PIPELINE VERSION         : dante-rv-3081(adb2509)
+##PROTEIN DATABASE VERSION : Viridiplantae_v3.0_pdb
+##-----------------------------------------------
+##CLASSIFICATION	ORIGINAL_COUNTS	FILTERED_COUNTS
+##Ambiguous_domain	1	0
+##Class_I|LTR|Ty1/copia|Bianca	6	5
+##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila	7	5
+##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat	3	2
+##Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand	4	2
+##-----------------------------------------------
+##SEQ	DOMAIN	COUNTS
+##scaffold146.1|size86774	INT	3
+##scaffold146.1|size86774	PROT	4
+##scaffold146.1|size86774	RH	3
+##scaffold146.1|size86774	RT	3
+##scaffold146.1|size86774	aRH	1
+##-----------------------------------------------
+scaffold146.1|size86774	dante	protein_domain	976	1289	293	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:976-1289[100percent];Best_Hit_DB_Pos=26:134of134;DB_Seq=ISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCG-LSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFF-FTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=ISWRSTKQTIVAISSNHVELLAIHDTSRECVWLRFMIESI-----\IMXXXXXXXXXXXXXXXXXXQLKE*YIKCDRTKHISPKFF\FTQDLQKNGDVIIQQIRSNDNVVD;Identity=0.59;Similarity=0.66;Relat_Length=0.813;Relat_Interruptions=1.5;Hit_to_DB_Length=0.83
+scaffold146.1|size86774	dante	protein_domain	6810	7049	153	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-PROT__REXdb_ID9702|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:6810-7049[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=LVDDGSKVNLLPYRVFQQMGIPEEQLVRDQAPVKGIGGVPVLVEGKVKLALTLGEAPRTRTHYAVFLVVKPPLSYNAILG;Query_Seq=LVDSGASCNLMSKRVMKQMGIPDEKLEFLDATLYAFDRRTIIPAGKIQLPVTLGEEERTRSEMVEFIIVDMDLAYNAILG;Identity=0.44;Similarity=0.62;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	8756	9241	538	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[486bp],RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[441bp];Best_Hit=Ty3-RT__REXdb_ID8210|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:8801-9241[90percent];Best_Hit_DB_Pos=27:173of173;DB_Seq=DFTDLNKACPKDSFPLPHIDRLVDSTAGNELLTFMDAFSGYNQIMMNPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHLGKTMEVYIDDMLVKSLKKEDHVKHLEECFDILNKYQMKLNPAKCTFGVPSGEFLGY;Query_Seq=DFKGVNKHCQPDPFPLPHIDRLVDAVAGSSLLSTMDAYSGYHQISLAREDQAKSSFLTEDGVFCYVVMPFGLRNAGATYQRLVNKIFADLLGKEMEIYVDDMIVKSLNDEDHIIYLSHCFEVCRTHRLKLNPAKCCFGVRSGKFLGY;Identity=0.63;Similarity=0.8;Relat_Length=0.85;Relat_Interruptions=0.0;Hit_to_DB_Length=0.85
+scaffold146.1|size86774	dante	protein_domain	10810	11667	747	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand;Best_Hit=Ty3-INT__REXdb_ID9633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10819-11667[98percent];Best_Hit_DB_Pos=30:310of310;DB_Seq=RDTHQYVQRCIQCQKFAPLIHKPGEEMTIMSAPCPFAQWGIDLVGPFPQTAGRKKFFIVAVDYFTKWVEAEALSKITEDEVMHFIWKYICCRFGLPRSLVSDNGTQFNGKKIRAWCEEMKITQKFVAVAHPQANGQVESTNRTIVNGLKKRIDELGGSWVDELPSVLWSYRTSAKAATGETPFRLTYGTEAVIPVEVAMDTLRIATF--DEEANDGALRTRLDEIFDLREAAYLHMERSKNLIKARYDQGVRSRSFQIGDLILRRADALKHTGKLEANWEGPY;Query_Seq=RDAMDCVRRCQSCQYFAPINRKPGAEITLTELPCPFDRWGIDILGPFPQSVRQRRFCIVAVEYHSKWIEAEAVASITSEAVKKFVMNNIIVRFGCPRVLVSDNGPQFISDKFATFCEEYGIQQRTSSVYHPQTNGQAEASNKIILHGLRRNLDSLGGSWPDQLPHVLWAYRTTPKSSTGETPFSLVYGSEAVAPVESTIITPRIAAYMHTESANTEFRELDLDLLEERRNEVYGRVRKQQRALRKRYNQRVRPRQFEKGDLILRSVESQGHKGKLDRAWEGPY;Identity=0.49;Similarity=0.66;Relat_Length=0.906;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+scaffold146.1|size86774	dante	protein_domain	14592	14828	289	+	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:14592-14828[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYSIYSALQLGPLQGTAIVIKLADRSNTHPEGVIEDVLVQVNNLVFPADFYVLKM-GKAENNDCPLLLG;Identity=0.68;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	15420	15995	871	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RT__REXdb_ID6635|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:15420-15995[100percent];Best_Hit_DB_Pos=1:192of192;DB_Seq=IYPITDSKWVAPIHVVPKKTGITLVKNKNDELIPTRISSGWRMCVDYRKLNLATRKDHFPLPFMDQMLERLAGKSFYCFLDGYSGYNQIVINPEDQEKTTFTCPFGTYAYRRMPFGLCNAPATFQRCMMSIFSDYVERIIEVFMDDFTVYGDSFDKCLENLSLILKRCIETNLVLNYEKCYFMVEQGIVLGH;Query_Seq=IYAISDSDWVSPVHVVPKKTGFTVERNKNGELVPKRVTNGWRVCIDYRKLNDATRKDHFPLPFIDQMLERLAGKKFYCFLDGYSGYNQVAIAPEDQEKTTFTCTYGTYAFRKMPFGLCNAPATFQRCMLSIFSEFTGKFIEVFMDDFTVYGDSFEGALENLEKVLQRCVEKKLVLNSEKCHFMVRQGIVLGH;Identity=0.76;Similarity=0.88;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	16188	16634	623	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=RH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-RH__REXdb_ID6648|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16188-16634[100percent];Best_Hit_DB_Pos=1:149of149;DB_Seq=FNEACKVAFDKLKELLTSAPIIQPPDWSLPFEIMCDASNYVVGAVLGQRVGRAAHVIYYTSRTLDSAQCNYSTTEKELLAIVFALEKFRSYLLGTKVIIFSDHAALRYLLAKKEAKPRLIRWILLLQEFNLEIRDKKGTENLVADHLSR;Query_Seq=FNQECQEAFNKLKSLLTAAPIIQPPNWELPFELMCDASNYALGAVLGQKIEGKRHVIYYASKTLSEAQIHYTTTEKELLAIVYALEKFRSYLLGTKITVHSDHAALRHLLSKKESKPRLIRWILLLQEFDLEIKDRAGTENAVADNLSR;Identity=0.74;Similarity=0.87;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	24873	25481	913	+	.	Name=INT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=INT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-INT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:24873-25481[100percent];Best_Hit_DB_Pos=1:203of203;DB_Seq=HERLGHPGSIMMRKIIEHSCGHQLKSREILQSNKFSCTSCSQGKLITRPSPTKIGSESLNFLERIHGDICGPIHPPCGPFRYFMVLIDASTRWSHVCLLSTRNQAFARLLAQLIRIRAHFPDYPVKKIRLDNAAEFSSQTFNDYCMSIGIDIEHPVAHVHTQNGLAESFIKRIQLIARPLLMRCKLPISTWGHAILHAATLIR;Query_Seq=HDRLGHPGMIMMRKIIRTTSGHSLKNREILHPREYICTACAQGKLITRPSPVKIMNERITFLERIQGDICGPIHPACGPFRYFIVLIDASSRWSHVSLLSTRNHAFARLLSQIIRLRAHFPDYPVKKIRLDNAAEFTSRTFNNYCLAMGIDVEHPVEYVHTQNGLAESLIKRLQLIARPLLMKSKLPVTCWGHAIIHASSLIR;Identity=0.75;Similarity=0.9;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	26313	27428	1060	+	.	Name=RT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RT__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:26322-27032[63percent];Best_Hit_DB_Pos=1:237of262;DB_Seq=WKDAIKAELYSLNKRKVFGPVVRTPKGVKPVGYKWVFVRKRNENGEIARYKARLVAQGFSQRPGIDFNETYSPVVDATTFRYLISLIAYEGLNLHMMDVVTAYLYGSLDSDIYMKIPEGFNLPDTNSSGSREDYSIKLNKSLYGLKQSGRMWYNRLSEYLLKEGYKNDSVCPCIFMKRSENEFAIIAVYVDDINIIGTPEELPKAIDCLKKEFEMKDLGKTKFCLGLQIEHLNNGIF;Query_Seq=WKDAIESELKSLNKRDVFGPVVRTPEGVQPVGYKWVFVRKRNDKGEISRYKARLVAQGFSQRPGIDYDETYSPVMDATTFRFLISLAIEYGLDLQLMDVVTAYLYGSLDCEIYMKIPEGFHMPERYSSEPRTDYAIKLNKSLYGLKQSGRMWYNRLSEYLIKEGYKNNLVCPCVFMKKFENEFVIIAVYVDDINIVGTQKALLDAVNCLKREFEMKDLGRTKYCLGLQIEYLKNGIF;Identity=0.78;Similarity=0.91;Relat_Length=0.905;Relat_Interruptions=0.0;Hit_to_DB_Length=0.9
+scaffold146.1|size86774	dante	protein_domain	27723	28124	581	+	.	Name=RH;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=RH|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-RH__REXdb_ID2558|Class_I|LTR|Ty1/copia|Bianca:27723-28124[100percent];Best_Hit_DB_Pos=1:134of134;DB_Seq=DAGYLSDPHHGRSQTGYLFTSGNTAISWRSVKQTITATSSNHAELLALHEASRECVWLRSMIQHIQKNCGLSSGRMDATIIYEDNTACIAQLKEGYIKGDRTKHISPKFFFTHDLQKDGDISIQQIRSCDNLAD;Query_Seq=DAGYRSDPHNGRSQTGYVFLNKGAAISWRSTKQTIAATSSNHAELLAIHETSRECVWLRSMIESIYNACGLFTDKMPPTVLYEDNSACIIQLKEGYIKGDRTKHISPKFFFTHDLQKNGEVIIQQIRSSDNVAD;Identity=0.75;Similarity=0.84;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	10299	10658	303	-	.	Name=aRH;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat;Region_Hits_Classifications=aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Ogre[360bp],aRH|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|TatII[360bp];Best_Hit=Ty3-aRH__REXdb_ID9546|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Tat|Retand:10299-10658[100percent];Best_Hit_DB_Pos=1:121of121;DB_Seq=WILHVDGASSKQGSGIGIRLQSPYGEVIEQSFCLAFNASNNEAEYESLLAGLRLAVGIGVTKLRAFCNSQLVANQFSGDYEAKDSRMEAYLAQVQELSKKFLSFELARIPRSENSAADSLA;Query_Seq=WNMYIDG-STQSGAGVGVHYITPYGDWINLAVKLQFPATNNVAEYEALLAGMNFALSLGVTRLKTFSDSQLVVEQFSGHFQAKEPMLEAYKSRSQLLAAKFSEFSLEHIPRESNRAADSLA;Identity=0.49;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	16797	17666	1057	-	.	Name=INT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=INT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-INT__REXdb_ID6633|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:16812-17666[98percent];Best_Hit_DB_Pos=1:285of313;DB_Seq=HSHSYGGHFGAKRTAHKVLESGFYWPSIFKDAYHFCKSCEKCQRTGNITHKNQMPLTNILVSEIFDVWGIDFMGPFPSSFGNLYILLVVDYVSKWIEAKATRTNDAKVVLDFVRTHIFNRFGIPKAIISDRGTHFCNRSMEALLRKYHVTHRTSTAYHPQTNGQAEISNREIKSILEKIVQPNRRDWSLRLGDALWAYRTAYKSPIGMSPYRMIYGKACHLPVELEHKAFWAIKQCNMDYDAAGIARKLQLQELEEIRNDAYENARIYKEKTKNLHDRMLTRKEF;Query_Seq=HASDYGGHFGPNRTARRILDVGFYWPSIFRDVYQFCRTCDACQRVGNITNRREMPQNYILANEIFDIWGLDFMGPFPQSQGNNYILVAVDYVSKWVEAIPTRTDDGKTVTEFLRKNIFTRYGVPKAIISDRGTHFCNSTMRAMMKKYNVIHKTTTAYHPQGNGQAEATNREIKSILEKVVNKKRSNWSQKLPDALWAYRTAYKTPIGTTPFRLIYGKHCNLPVGLEHKAYWAIREMNFEEGGDAELRQMQLQELDALRLEAYDNSRIYKERLKTYHDKKLLQQNF;Identity=0.61;Similarity=0.79;Relat_Length=0.911;Relat_Interruptions=0.0;Hit_to_DB_Length=0.91
+scaffold146.1|size86774	dante	protein_domain	19976	20212	259	-	.	Name=PROT;Final_Classification=Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Region_Hits_Classifications=PROT|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila;Best_Hit=Ty3-PROT__REXdb_ID6659|Class_I|LTR|Ty3/gypsy|non-chromovirus|OTA|Athila:19976-20212[100percent];Best_Hit_DB_Pos=1:80of80;DB_Seq=MLDLGASINVMPYSIYNSLNLGPMEETCIIIQLADRSNAYPKGVMEDVLVQVNELVFPADFYILKMEDELSPNPTPILLG;Query_Seq=MVDLGASINLMPYYIYSALKLGSLQGTAIIIKLADRSETHPEGVVKDVLAQVNNLVFPADFYVLKM-GEAENDDCPLLLG;Identity=0.62;Similarity=0.79;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
+scaffold146.1|size86774	dante	protein_domain	28912	29124	216	-	.	Name=PROT;Final_Classification=Class_I|LTR|Ty1/copia|Bianca;Region_Hits_Classifications=PROT|Class_I|LTR|Ty1/copia|Bianca;Best_Hit=Ty1-PROT__REXdb_ID2599|Class_I|LTR|Ty1/copia|Bianca:28912-29124[100percent];Best_Hit_DB_Pos=1:71of71;DB_Seq=CLADCATTHTILRDKRYFLELTLIKANVSTISGTTNLVEGSGRANIMLPNGTRFHINDALYSSKSRRNLLS;Query_Seq=CLVDSATTHTILKNMRYFTSFEKRDVNIATIVCEANIVEGSGRAVIVLPSGTHIRIDDALYANKSRRNLLS;Identity=0.59;Similarity=0.7;Relat_Length=1.0;Relat_Interruptions=0.0;Hit_to_DB_Length=1.0
--- a/tool-data/blosum80.txt	Wed Jul 03 02:02:34 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,27 +0,0 @@
-# Entries for the BLOSUM80 matrix at a scale of ln(2)/2.0.
-   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
-A  5 -2 -2 -2 -1 -1 -1  0 -2 -2 -2 -1 -1 -3 -1  1  0 -3 -2  0 -2 -2 -1 -1 -6
-R -2  6 -1 -2 -4  1 -1 -3  0 -3 -3  2 -2 -4 -2 -1 -1 -4 -3 -3 -1 -3  0 -1 -6
-N -2 -1  6  1 -3  0 -1 -1  0 -4 -4  0 -3 -4 -3  0  0 -4 -3 -4  5 -4  0 -1 -6
-D -2 -2  1  6 -4 -1  1 -2 -2 -4 -5 -1 -4 -4 -2 -1 -1 -6 -4 -4  5 -5  1 -1 -6
-C -1 -4 -3 -4  9 -4 -5 -4 -4 -2 -2 -4 -2 -3 -4 -2 -1 -3 -3 -1 -4 -2 -4 -1 -6
-Q -1  1  0 -1 -4  6  2 -2  1 -3 -3  1  0 -4 -2  0 -1 -3 -2 -3  0 -3  4 -1 -6
-E -1 -1 -1  1 -5  2  6 -3  0 -4 -4  1 -2 -4 -2  0 -1 -4 -3 -3  1 -4  5 -1 -6
-G  0 -3 -1 -2 -4 -2 -3  6 -3 -5 -4 -2 -4 -4 -3 -1 -2 -4 -4 -4 -1 -5 -3 -1 -6
-H -2  0  0 -2 -4  1  0 -3  8 -4 -3 -1 -2 -2 -3 -1 -2 -3  2 -4 -1 -4  0 -1 -6
-I -2 -3 -4 -4 -2 -3 -4 -5 -4  5  1 -3  1 -1 -4 -3 -1 -3 -2  3 -4  3 -4 -1 -6
-L -2 -3 -4 -5 -2 -3 -4 -4 -3  1  4 -3  2  0 -3 -3 -2 -2 -2  1 -4  3 -3 -1 -6
-K -1  2  0 -1 -4  1  1 -2 -1 -3 -3  5 -2 -4 -1 -1 -1 -4 -3 -3 -1 -3  1 -1 -6
-M -1 -2 -3 -4 -2  0 -2 -4 -2  1  2 -2  6  0 -3 -2 -1 -2 -2  1 -3  2 -1 -1 -6
-F -3 -4 -4 -4 -3 -4 -4 -4 -2 -1  0 -4  0  6 -4 -3 -2  0  3 -1 -4  0 -4 -1 -6
-P -1 -2 -3 -2 -4 -2 -2 -3 -3 -4 -3 -1 -3 -4  8 -1 -2 -5 -4 -3 -2 -4 -2 -1 -6
-S  1 -1  0 -1 -2  0  0 -1 -1 -3 -3 -1 -2 -3 -1  5  1 -4 -2 -2  0 -3  0 -1 -6
-T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -2 -1 -1 -2 -2  1  5 -4 -2  0 -1 -1 -1 -1 -6
-W -3 -4 -4 -6 -3 -3 -4 -4 -3 -3 -2 -4 -2  0 -5 -4 -4 11  2 -3 -5 -3 -3 -1 -6
-Y -2 -3 -3 -4 -3 -2 -3 -4  2 -2 -2 -3 -2  3 -4 -2 -2  2  7 -2 -3 -2 -3 -1 -6
-V  0 -3 -4 -4 -1 -3 -3 -4 -4  3  1 -3  1 -1 -3 -2  0 -3 -2  4 -4  2 -3 -1 -6
-B -2 -1  5  5 -4  0  1 -1 -1 -4 -4 -1 -3 -4 -2  0 -1 -5 -3 -4  5 -4  0 -1 -6
-J -2 -3 -4 -5 -2 -3 -4 -5 -4  3  3 -3  2  0 -4 -3 -1 -3 -2  2 -4  3 -3 -1 -6
-Z -1  0  0  1 -4  4  5 -3  0 -4 -3  1 -1 -4 -2  0 -1 -3 -3 -3  0 -3  5 -1 -6
-X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -6
-* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6  1
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/blosum80.txt.sample	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,27 @@
+# Entries for the BLOSUM80 matrix at a scale of ln(2)/2.0.
+   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  J  Z  X  *
+A  5 -2 -2 -2 -1 -1 -1  0 -2 -2 -2 -1 -1 -3 -1  1  0 -3 -2  0 -2 -2 -1 -1 -6
+R -2  6 -1 -2 -4  1 -1 -3  0 -3 -3  2 -2 -4 -2 -1 -1 -4 -3 -3 -1 -3  0 -1 -6
+N -2 -1  6  1 -3  0 -1 -1  0 -4 -4  0 -3 -4 -3  0  0 -4 -3 -4  5 -4  0 -1 -6
+D -2 -2  1  6 -4 -1  1 -2 -2 -4 -5 -1 -4 -4 -2 -1 -1 -6 -4 -4  5 -5  1 -1 -6
+C -1 -4 -3 -4  9 -4 -5 -4 -4 -2 -2 -4 -2 -3 -4 -2 -1 -3 -3 -1 -4 -2 -4 -1 -6
+Q -1  1  0 -1 -4  6  2 -2  1 -3 -3  1  0 -4 -2  0 -1 -3 -2 -3  0 -3  4 -1 -6
+E -1 -1 -1  1 -5  2  6 -3  0 -4 -4  1 -2 -4 -2  0 -1 -4 -3 -3  1 -4  5 -1 -6
+G  0 -3 -1 -2 -4 -2 -3  6 -3 -5 -4 -2 -4 -4 -3 -1 -2 -4 -4 -4 -1 -5 -3 -1 -6
+H -2  0  0 -2 -4  1  0 -3  8 -4 -3 -1 -2 -2 -3 -1 -2 -3  2 -4 -1 -4  0 -1 -6
+I -2 -3 -4 -4 -2 -3 -4 -5 -4  5  1 -3  1 -1 -4 -3 -1 -3 -2  3 -4  3 -4 -1 -6
+L -2 -3 -4 -5 -2 -3 -4 -4 -3  1  4 -3  2  0 -3 -3 -2 -2 -2  1 -4  3 -3 -1 -6
+K -1  2  0 -1 -4  1  1 -2 -1 -3 -3  5 -2 -4 -1 -1 -1 -4 -3 -3 -1 -3  1 -1 -6
+M -1 -2 -3 -4 -2  0 -2 -4 -2  1  2 -2  6  0 -3 -2 -1 -2 -2  1 -3  2 -1 -1 -6
+F -3 -4 -4 -4 -3 -4 -4 -4 -2 -1  0 -4  0  6 -4 -3 -2  0  3 -1 -4  0 -4 -1 -6
+P -1 -2 -3 -2 -4 -2 -2 -3 -3 -4 -3 -1 -3 -4  8 -1 -2 -5 -4 -3 -2 -4 -2 -1 -6
+S  1 -1  0 -1 -2  0  0 -1 -1 -3 -3 -1 -2 -3 -1  5  1 -4 -2 -2  0 -3  0 -1 -6
+T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -2 -1 -1 -2 -2  1  5 -4 -2  0 -1 -1 -1 -1 -6
+W -3 -4 -4 -6 -3 -3 -4 -4 -3 -3 -2 -4 -2  0 -5 -4 -4 11  2 -3 -5 -3 -3 -1 -6
+Y -2 -3 -3 -4 -3 -2 -3 -4  2 -2 -2 -3 -2  3 -4 -2 -2  2  7 -2 -3 -2 -3 -1 -6
+V  0 -3 -4 -4 -1 -3 -3 -4 -4  3  1 -3  1 -1 -3 -2  0 -3 -2  4 -4  2 -3 -1 -6
+B -2 -1  5  5 -4  0  1 -1 -1 -4 -4 -1 -3 -4 -2  0 -1 -5 -3 -4  5 -4  0 -1 -6
+J -2 -3 -4 -5 -2 -3 -4 -5 -4  3  3 -3  2  0 -4 -3 -1 -3 -2  2 -4  3 -3 -1 -6
+Z -1  0  0  1 -4  4  5 -3  0 -4 -3  1 -1 -4 -2  0 -1 -3 -3 -3  0 -3  5 -1 -6
+X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -6
+* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6  1
--- a/tool-data/rexdb_versions.loc	Wed Jul 03 02:02:34 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-#name	value is base name for file with classification and pdb
-Viridiplantae_version_3.0	Viridiplantae_v3.0
-Viridiplantae_version_2.2	Viridiplantae_v2.2
-Metazoa_version_3.1	Metazoa_v3.1
-Metazoa_version_3.0	Metazoa_v3.0
-
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/rexdb_versions.loc.sample	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,6 @@
+#name	value is base name for file with classification and pdb
+Viridiplantae_version_3.0	Viridiplantae_v3.0
+Viridiplantae_version_2.2	Viridiplantae_v2.2
+Metazoa_version_3.1	Metazoa_v3.1
+Metazoa_version_3.0	Metazoa_v3.0
+
--- a/tool-data/select_domain.loc	Wed Jul 03 02:02:34 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-All
-GAG
-INT
-PROT
-RH
-RT
-aRH
-CHDCR
-CHDII
-TPase
-YR
-HEL1
-HEL2
-ENDO
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/select_domain.loc.sample	Wed Jul 03 02:23:49 2019 -0400
@@ -0,0 +1,14 @@
+All
+GAG
+INT
+PROT
+RH
+RT
+aRH
+CHDCR
+CHDII
+TPase
+YR
+HEL1
+HEL2
+ENDO