Mercurial > repos > peterjc > seq_select_by_id
changeset 31:79178c8f1252 draft default tip
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_select_by_id commit d67596914a7bbe183851437eaafe8c7305877e5a-dirty
| author | peterjc |
|---|---|
| date | Fri, 22 Feb 2019 10:27:13 -0500 |
| parents | b1e322f39f6c |
| children | |
| files | tools/seq_select_by_id/seq_select_by_id.py tools/seq_select_by_id/tool_dependencies.xml |
| diffstat | 2 files changed, 10 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/tools/seq_select_by_id/seq_select_by_id.py Fri Nov 09 11:13:47 2018 -0500 +++ b/tools/seq_select_by_id/seq_select_by_id.py Fri Feb 22 10:27:13 2019 -0500 @@ -33,7 +33,9 @@ try: tabular_file, col_arg, in_file, seq_format, out_file = sys.argv[1:] except ValueError: - sys.exit("Expected five arguments, got %i:\n%s" % (len(sys.argv) - 1, " ".join(sys.argv))) + sys.exit( + "Expected five arguments, got %i:\n%s" % (len(sys.argv) - 1, " ".join(sys.argv)) + ) try: if col_arg.startswith("c"): column = int(col_arg[1:]) - 1 @@ -76,8 +78,10 @@ field = line.rstrip("\n").split("\t")[col].strip() parts = field.split(None, 1) if len(parts) > 1 and not warn: - warn = "WARNING: Some of your identifiers had white space in them, " + \ - "using first word only. e.g.:\n%s\n" % field + warn = ( + "WARNING: Some of your identifiers had white space in them, " + + "using first word only. e.g.:\n%s\n" % field + ) yield parts[0] handle.close() if warn:
--- a/tools/seq_select_by_id/tool_dependencies.xml Fri Nov 09 11:13:47 2018 -0500 +++ b/tools/seq_select_by_id/tool_dependencies.xml Fri Feb 22 10:27:13 2019 -0500 @@ -1,6 +1,6 @@ -<?xml version="1.0"?> +<?xml version="1.0" ?> <tool_dependency> <package name="biopython" version="1.67"> - <repository changeset_revision="fc45a61abc2f" name="package_biopython_1_67" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="fc45a61abc2f" name="package_biopython_1_67" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu"/> </package> -</tool_dependency> +</tool_dependency> \ No newline at end of file