Mercurial > repos > peterjc > seq_rename

changeset 3:16a1a5ae98e9 draft

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Test both column naming styles
author peterjc
date Wed, 08 May 2013 13:25:12 -0400
parents b51633a69a92
children d00a3cda08d8
files tools/filters/seq_rename.xml
diffstat 1 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tools/filters/seq_rename.xml	Tue May 07 09:52:31 2013 -0400
+++ b/tools/filters/seq_rename.xml	Wed May 08 13:25:12 2013 -0400
@@ -36,6 +36,13 @@
 			<param name="new_column" value="2" />
 			<output name="output_file" file="four_human_proteins.rename.fasta" ftype="fasta" />
 		</test>
+		<test>
+			<param name="input_file" value="four_human_proteins.fasta" ftype="fasta" />
+			<param name="input_tabular" value="four_human_proteins.rename.tabular" ftype="tabular" />
+			<param name="old_column" value="c1" />
+			<param name="new_column" value="c2" />
+			<output name="output_file" file="four_human_proteins.rename.fasta" ftype="fasta" />
+		</test>
 	</tests>
 	<requirements>
 		<requirement type="python-module">Bio</requirement>