Mercurial > repos > peterjc > secreted_protein_workflow
changeset 2:aecb871dfe4c draft
Uploaded v0.0.1b, repository_dependencies.xml with implicit current toolshed & latest revision
| author | peterjc |
|---|---|
| date | Mon, 08 Jul 2013 11:19:47 -0400 |
| parents | 9f2fea8a5d32 |
| children | 237d3bef3b86 |
| files | README.txt repository_dependencies.xml |
| diffstat | 2 files changed, 29 insertions(+), 2 deletions(-) [+] |
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--- a/README.txt Mon May 06 11:25:32 2013 -0400 +++ b/README.txt Mon Jul 08 11:19:47 2013 -0400 @@ -23,3 +23,30 @@ Development is being done on github here: https://github.com/peterjc/picobio/tree/master/galaxy_workflows/secreted_protein_workflow + + +Dependencies +============ + +These dependencies should be resolved automatically via the Galaxy Tool Shed: + * http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp + * http://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id + +However, at the time of writing those Galaxy tools have their own dependencies +required for this workflow which require manual installation (SignalP v3.0 +and TMHMM v2.0). + + +Development +=========== + +To prepare the tar-ball for uploading to the Tool Shed, I use this: + +$ tar -cf secreted_protein_workflow.tar.gz README.txt repository_dependencies.xml secreted_protein_workflow.ga + +Check this, + +$ tar -tzf secreted_protein_workflow.tar.gz +README.txt +repository_dependencies.xml +secreted_protein_workflow.ga
--- a/repository_dependencies.xml Mon May 06 11:25:32 2013 -0400 +++ b/repository_dependencies.xml Mon Jul 08 11:19:47 2013 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <repositories description="This requires my SignalP and TMHMM wrapers, and my FASTA filtering tool."> <!-- Revision 15:6abd809cefdd on the main tool shed is v0.2.4, the current latest - but older should be OK --> - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="tmhmm_and_signalp" owner="peterjc" changeset_revision="6abd809cefdd" /> + <repository changeset_revision="4cd848c5590b" name="tmhmm_and_signalp" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> <!-- Revision 2:abdd608c869b on the main tool shed is v0.0.5, the current latest - but older should be OK --> - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="seq_filter_by_id" owner="peterjc" changeset_revision="abdd608c869b" /> + <repository changeset_revision="66d1ca92fb38" name="seq_filter_by_id" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>