# HG changeset patch
# User peterjc
# Date 1373296787 14400
# Node ID aecb871dfe4c5d864c030f1ba5efba4072e59973
# Parent  9f2fea8a5d3208b3043dd0d98e6ef9e657440781
Uploaded v0.0.1b, repository_dependencies.xml with implicit current toolshed & latest revision

diff -r 9f2fea8a5d32 -r aecb871dfe4c README.txt
--- a/README.txt	Mon May 06 11:25:32 2013 -0400
+++ b/README.txt	Mon Jul 08 11:19:47 2013 -0400
@@ -23,3 +23,30 @@
 
 Development is being done on github here:
 https://github.com/peterjc/picobio/tree/master/galaxy_workflows/secreted_protein_workflow
+
+
+Dependencies
+============
+
+These dependencies should be resolved automatically via the Galaxy Tool Shed:
+ * http://toolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp
+ * http://toolshed.g2.bx.psu.edu/view/peterjc/seq_filter_by_id
+
+However, at the time of writing those Galaxy tools have their own dependencies
+required for this workflow which require manual installation (SignalP v3.0
+and TMHMM v2.0).
+
+
+Development
+===========
+
+To prepare the tar-ball for uploading to the Tool Shed, I use this:
+
+$ tar -cf secreted_protein_workflow.tar.gz README.txt repository_dependencies.xml secreted_protein_workflow.ga
+
+Check this,
+
+$ tar -tzf secreted_protein_workflow.tar.gz 
+README.txt
+repository_dependencies.xml
+secreted_protein_workflow.ga
diff -r 9f2fea8a5d32 -r aecb871dfe4c repository_dependencies.xml
--- a/repository_dependencies.xml	Mon May 06 11:25:32 2013 -0400
+++ b/repository_dependencies.xml	Mon Jul 08 11:19:47 2013 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <repositories description="This requires my SignalP and TMHMM wrapers, and my FASTA filtering tool.">
     <!-- Revision 15:6abd809cefdd on the main tool shed is v0.2.4, the current latest - but older should be OK -->
-    <repository toolshed="http://toolshed.g2.bx.psu.edu" name="tmhmm_and_signalp" owner="peterjc" changeset_revision="6abd809cefdd" />
+    <repository changeset_revision="4cd848c5590b" name="tmhmm_and_signalp" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     <!-- Revision 2:abdd608c869b on the main tool shed is v0.0.5, the current latest - but older should be OK -->
-    <repository toolshed="http://toolshed.g2.bx.psu.edu" name="seq_filter_by_id" owner="peterjc" changeset_revision="abdd608c869b" />
+    <repository changeset_revision="66d1ca92fb38" name="seq_filter_by_id" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
 </repositories>