Mercurial > repos > peterjc > samtools_idxstats
changeset 11:6955e091c023 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_idxstats commit 37d5b47ec23e2cbaa453cc660bb1fcbb10dd34ee-dirty
| author | peterjc |
|---|---|
| date | Wed, 17 May 2017 11:21:00 -0400 |
| parents | 515fc5316fdb |
| children | c01ff711ee54 |
| files | tools/samtools_idxstats/README.rst tools/samtools_idxstats/samtools_idxstats.py tools/samtools_idxstats/samtools_idxstats.xml |
| diffstat | 3 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/tools/samtools_idxstats/README.rst Thu May 11 12:48:26 2017 -0400 +++ b/tools/samtools_idxstats/README.rst Wed May 17 11:21:00 2017 -0400 @@ -56,6 +56,7 @@ - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.0.5 - Use ``<command detect_errors="aggressive">`` (internal change only). - Single quote command line arguments (internal change only). +v0.0.6 - Python 3 compatible print function. ======= ======================================================================
--- a/tools/samtools_idxstats/samtools_idxstats.py Thu May 11 12:48:26 2017 -0400 +++ b/tools/samtools_idxstats/samtools_idxstats.py Wed May 17 11:21:00 2017 -0400 @@ -11,13 +11,15 @@ tabular file. """ +from __future__ import print_function + import os import sys import tempfile if "-v" in sys.argv or "--version" in sys.argv: # Galaxy seems to invert the order of the two lines - print "(Galaxy wrapper v0.0.2)" + print("(Galaxy wrapper v0.0.3)") cmd = "samtools 2>&1 | grep -i ^Version" sys.exit(os.system(cmd))
--- a/tools/samtools_idxstats/samtools_idxstats.xml Thu May 11 12:48:26 2017 -0400 +++ b/tools/samtools_idxstats/samtools_idxstats.xml Wed May 17 11:21:00 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="samtools_idxstats" name="BAM mapping statistics" version="0.0.5"> +<tool id="samtools_idxstats" name="BAM mapping statistics" version="0.0.6"> <description>samtools idxstats</description> <requirements> <requirement type="package" version="0.1.19">samtools</requirement>