Mercurial > repos > peterjc > sample_seqs
changeset 14:074c7f9d27bf draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/sample_seqs commit 6d77d2fbb0d3ea1fd4db369073654b8a920c44bf-dirty
| author | peterjc |
|---|---|
| date | Fri, 21 Apr 2017 12:04:26 -0400 |
| parents | f414dedc4642 |
| children | 19306a5f88b2 |
| files | tools/sample_seqs/README.rst tools/sample_seqs/sample_seqs.xml tools/sample_seqs/tool_dependencies.xml |
| diffstat | 3 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/tools/sample_seqs/README.rst Thu Feb 09 11:25:08 2017 -0500 +++ b/tools/sample_seqs/README.rst Fri Apr 21 12:04:26 2017 -0400 @@ -1,7 +1,7 @@ Galaxy tool to sub-sample sequence files ======================================== -This tool is copyright 2014-2015 by Peter Cock, The James Hutton Institute +This tool is copyright 2014-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -71,6 +71,7 @@ - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.2.3 - Do the Biopython imports at the script start (internal change only). - Clarify paired read example in help text. + - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. ======= ======================================================================
--- a/tools/sample_seqs/sample_seqs.xml Thu Feb 09 11:25:08 2017 -0500 +++ b/tools/sample_seqs/sample_seqs.xml Fri Apr 21 12:04:26 2017 -0400 @@ -1,8 +1,7 @@ <tool id="sample_seqs" name="Sub-sample sequences files" version="0.2.3"> <description>e.g. to reduce coverage</description> <requirements> - <requirement type="package" version="1.65">biopython</requirement> - <requirement type="python-module">Bio</requirement> + <requirement type="package" version="1.67">biopython</requirement> </requirements> <stdio> <!-- Anything other than zero is an error -->
--- a/tools/sample_seqs/tool_dependencies.xml Thu Feb 09 11:25:08 2017 -0500 +++ b/tools/sample_seqs/tool_dependencies.xml Fri Apr 21 12:04:26 2017 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="biopython" version="1.65"> - <repository changeset_revision="b3a791f6e3ba" name="package_biopython_1_65" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="biopython" version="1.67"> + <repository changeset_revision="fc45a61abc2f" name="package_biopython_1_67" owner="biopython" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>