Mercurial > repos > peterjc > rxlr_venn_workflow
changeset 3:65d174589251 draft
Uploaded v0.0.1c, repository_dependencies.xml with implicit current toolshed & latest revision
| author | peterjc |
|---|---|
| date | Mon, 08 Jul 2013 11:21:05 -0400 |
| parents | e99b1bbe44f8 |
| children | 25e0ffd4f762 |
| files | README.txt repository_dependencies.xml |
| diffstat | 2 files changed, 26 insertions(+), 4 deletions(-) [+] |
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--- a/README.txt Tue May 07 13:54:45 2013 -0400 +++ b/README.txt Mon Jul 08 11:21:05 2013 -0400 @@ -32,6 +32,9 @@ This workflow is available on the main Galaxy Tool Shed: http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow +Test releases (which should not be used) are on the Test Tool Shed: +http://testtoolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow + Development is being done on github here: https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow @@ -47,3 +50,22 @@ However, at the time of writing those Galaxy tools have their own dependencies required for this workflow which require manual installation (SignalP v3.0, HMMER v2.0, and the R/Bioconductor package limma). + + +Developers +========== + +This workflow is under source code control here: + +https://github.com/peterjc/picobio/tree/master/galaxy_workflows/rxlr_venn_workflow + +To prepare the tar-ball for uploading to the Tool Shed, I use this: + +$ tar -cf rxlr_venn_workflow.tar.gz README.txt repository_dependencies.xml rxlr_venn_workflow.ga + +Check this, + +$ tar -tzf rxlr_venn_workflow.tar.gz +README.txt +repository_dependencies.xml +rxlr_venn_workflow.ga
--- a/repository_dependencies.xml Tue May 07 13:54:45 2013 -0400 +++ b/repository_dependencies.xml Mon Jul 08 11:21:05 2013 -0400 @@ -1,9 +1,9 @@ <?xml version="1.0"?> <repositories description="This requires my SignalP and TMHMM wrapers, and my FASTA filtering tool."> <!-- Revision 15:6abd809cefdd on the main tool shed is v0.2.4, the current latest - but older should be OK --> - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="tmhmm_and_signalp" owner="peterjc" changeset_revision="6abd809cefdd" /> + <repository ame="tmhmm_and_signalp" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> <!-- Revision 2:abdd608c869b on the main tool shed is v0.0.5, the current latest - but older should be OK --> - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="seq_filter_by_id" owner="peterjc" changeset_revision="abdd608c869b" /> - <!-- Revision 0:baf7031d470e on the main tool shed is v0.0.3, currently the only revision --> - <repository toolshed="http://toolshed.g2.bx.psu.edu" name="venn_list" owner="peterjc" changeset_revision="baf7031d470e" /> + <repository changeset_revision="66d1ca92fb38" name="seq_filter_by_id" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <!-- Revisiion 2:c96bef0643dc on the main tool shed is v0.0.3, the current latest --> + <repository changeset_revision="51fe47a5a803" name="venn_list" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>