Mercurial > repos > peterjc > rxlr_venn_workflow
changeset 8:2dfe8b788fb6 draft
Uploaded v0.0.1h, attempt to show image in README file
| author | peterjc |
|---|---|
| date | Mon, 19 Aug 2013 13:22:30 -0400 |
| parents | 51aeb3d4799d |
| children | d893133128d8 |
| files | ._Phyca11_example_output.png Phyca11_example_output.png README.rst |
| diffstat | 3 files changed, 15 insertions(+), 3 deletions(-) [+] |
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--- a/README.rst Mon Aug 19 12:31:11 2013 -0400 +++ b/README.rst Mon Aug 19 13:22:30 2013 -0400 @@ -15,8 +15,19 @@ You can upload this directly into Galaxy via this URL. Galaxy will handle removing the gzip compression to give you the FASTA protein file which -has 19,805 protein sequences. Of these, only 79 sequences pass all three -of the RXLR prediction tools. +has 19,805 protein sequences. The expected results: + +* 89 RXLRs using Whisson et al. (2007) +* 124 RXLRs using Win et al. (2007) +* 162 RXLRs using Bhattacharjee et al. (006) + +Of these, only 79 sequences pass all three of the RXLR prediction tools, +while 19643 have no RXLR matches at all. + +.. image:: Phyca11_example_output.png + :height: 400px + :width: 400px + :alt: RXLR Venn diagram using Phytophthora capsici (Phyca11) Citation @@ -86,7 +97,7 @@ To prepare the tar-ball for uploading to the Tool Shed, I use this: - $ tar -cf rxlr_venn_workflow.tar.gz README.rst repository_dependencies.xml rxlr_venn_workflow.ga + $ tar -cf rxlr_venn_workflow.tar.gz README.rst repository_dependencies.xml rxlr_venn_workflow.ga Phyca11_example_output.png Check this, @@ -94,3 +105,4 @@ README.rst repository_dependencies.xml rxlr_venn_workflow.ga + Phyca11_example_output.png