comparison README.rst @ 7:51aeb3d4799d draft

Uploaded v0.0.1g, add Phyca11 example to README

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This is package is a Galaxy workflow for comparing three RXLR prediction
methods with a Venn Diagram, and creates a FASTA file of any proteins
passing all three methods.

See http://www.galaxyproject.org for information about the Galaxy Project.


Citation
========

7:51aeb3d4799d

This is package is a Galaxy workflow for comparing three RXLR prediction
methods with a Venn Diagram, and creates a FASTA file of any proteins
passing all three methods.

See http://www.galaxyproject.org for information about the Galaxy Project.


Sample Data
===========

This workflow was developed and run on several Phytophthora species.
For example, try the "Phyca11" protein set for Phytophthora capsici:

http://genome.jgi-psf.org/Phyca11/download/Phyca11_filtered_proteins.fasta.gz

You can upload this directly into Galaxy via this URL. Galaxy will handle
removing the gzip compression to give you the FASTA protein file which
has 19,805 protein sequences. Of these, only 79 sequences pass all three
of the RXLR prediction tools.


Citation
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