Mercurial > repos > peterjc > predictnls
changeset 13:8912199785fa draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/predictnls commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
| author | peterjc |
|---|---|
| date | Fri, 09 Nov 2018 10:58:26 -0500 |
| parents | 92bb5d75d77e |
| children | 077ab49169fd |
| files | tools/predictnls/README.rst tools/predictnls/predictnls.py tools/predictnls/predictnls.xml |
| diffstat | 3 files changed, 6 insertions(+), 6 deletions(-) [+] |
line wrap: on
line diff
--- a/tools/predictnls/README.rst Fri Sep 15 10:26:52 2017 -0400 +++ b/tools/predictnls/README.rst Fri Nov 09 10:58:26 2018 -0500 @@ -13,7 +13,7 @@ Murat Cokol, Rajesh Nair, and Burkhard Rost. Finding nuclear localization signals. EMBO reports 1(5), 411–415, 2000 -http://dx.doi.org/10.1093/embo-reports/kvd092 +https://doi.org/10.1093/embo-reports/kvd092 This wrapper is available from the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/predictnls
--- a/tools/predictnls/predictnls.py Fri Sep 15 10:26:52 2017 -0400 +++ b/tools/predictnls/predictnls.py Fri Nov 09 10:58:26 2018 -0500 @@ -9,7 +9,7 @@ # (nair@rostlab.org) and Burkhard Rost (rost@rostlab.org), Rost Lab, # Columbia University http://rostlab.org/ -"""Batch mode predictNLS, for finding nuclear localization signals +"""Batch mode predictNLS, for finding nuclear localization signals. This is a Python script re-implementing the predictNLS method, originally written in Perl, described here: @@ -18,7 +18,7 @@ Finding nuclear localization signals. EMBO reports 1(5), 411-415, 2000 -http://dx.doi.org/10.1093/embo-reports/kvd092 +https://doi.org/10.1093/embo-reports/kvd092 The original Perl script was designed to work on a single sequence at a time, but offers quite detailed output, including HTML (webpage). @@ -114,7 +114,7 @@ def fasta_iterator(filename): - """Simple FASTA parser yielding tuples of (name, upper case sequence).""" + """Parse FASTA file yielding tuples of (name, upper case sequence).""" if filename == "-": handle = sys.stdin else:
--- a/tools/predictnls/predictnls.xml Fri Sep 15 10:26:52 2017 -0400 +++ b/tools/predictnls/predictnls.xml Fri Nov 09 10:58:26 2018 -0500 @@ -77,12 +77,12 @@ Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ 1:e167 -http://dx.doi.org/10.7717/peerj.167 +https://doi.org/10.7717/peerj.167 Murat Cokol, Rajesh Nair, and Burkhard Rost (2000). Finding nuclear localization signals. EMBO reports 1(5), 411–415 -http://dx.doi.org/10.1093/embo-reports/kvd092 +https://doi.org/10.1093/embo-reports/kvd092 See also http://rostlab.org