Mercurial > repos > peterjc > ncbi_blast_plus
changeset 14:fb9cc7c43c22 draft
Uploaded v0.0.20 preview 5, cElementTree fallback
| author | peterjc |
|---|---|
| date | Thu, 02 May 2013 11:21:54 -0400 |
| parents | 462d362d0b8b |
| children | c19e1150779d |
| files | tools/ncbi_blast_plus/blastxml_to_tabular.py tools/ncbi_blast_plus/ncbi_blast_plus.txt |
| diffstat | 2 files changed, 6 insertions(+), 2 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/blastxml_to_tabular.py Mon Apr 29 12:24:35 2013 -0400 +++ b/tools/ncbi_blast_plus/blastxml_to_tabular.py Thu May 02 11:21:54 2013 -0400 @@ -63,11 +63,14 @@ import re if "-v" in sys.argv or "--version" in sys.argv: - print "v0.0.11" + print "v0.0.12" sys.exit(0) if sys.version_info[:2] >= ( 2, 5 ): - import xml.etree.cElementTree as ElementTree + try: + from xml.etree import cElementTree as ElementTree + except ImportError: + from xml.etree import ElementTree as ElementTree else: from galaxy import eggs import pkg_resources; pkg_resources.require( "elementtree" )
--- a/tools/ncbi_blast_plus/ncbi_blast_plus.txt Mon Apr 29 12:24:35 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_blast_plus.txt Thu May 02 11:21:54 2013 -0400 @@ -104,6 +104,7 @@ v0.0.20 - Added unit tests for BLASTN and TBLASTX. - Automatic installation via the Tool Shed now uses the NCBI provided precompiled binaries for 64bit Linux, rather than compiling locally. + - Fallback on ElementTree if cElementTree missing in XML to tabular. Developers