Mercurial > repos > peterjc > ncbi_blast_plus

changeset 43:d1330f50deb9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.1.0 preview 6, include missing new test file
author peterjc
date Thu, 27 Feb 2014 06:43:21 -0500
parents fa7be13bcba9
children 9fc8b8a639c9
files test-data/blastx_rhodopsin_vs_four_human_all.tabular
diffstat 1 files changed, 10 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/blastx_rhodopsin_vs_four_human_all.tabular	Thu Feb 27 06:43:21 2014 -0500
@@ -0,0 +1,10 @@
+gi|57163782|ref|NM_001009242.1|	sp|P08100|OPSD_HUMAN	96.55	348	12	0	1	1044	1	348	0.0	  639	sp|P08100|OPSD_HUMAN	1647	336	343	0	98.56	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|57163782|ref|NM_001009242.1|	gi|57163782|ref|NM_001009242.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA71FL4TS79VA9ML34VI71LI7SASA21LI13TA1GV11	99	99	N/A	N/A	N/A	N/A	N/A
+gi|2734705|gb|U59921.1|BBU59921	sp|P08100|OPSD_HUMAN	85.24	332	49	0	42	1037	1	332	0.0	  551	sp|P08100|OPSD_HUMAN	1419	283	315	0	94.88	3	0	MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRTPLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVVHFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQGSEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDD	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDE	1574	348	N/A	0	gi|2734705|gb|U59921.1|BBU59921	gi|2734705|gb|U59921.1|BBU59921	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	10IV1MF2KA20YF1IM1CA7LV7ML5IV17FV1NDHL4CG3VS1ML1ST1MLNH3IVLF1AP3YNVL36SG4VI7IV3SA2VA3LA9ML5VI26LM8RQ2CF30VIFA13FY2STNH3EN7VI7SASA9LM8IL2LI6FL1ED1DE	63	63	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	96.40	111	4	0	1	333	11	121	3e-67	  220	sp|P08100|OPSD_HUMAN	561	107	109	0	98.20	1	0	VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGG	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA9HY61FL4TS28	22	8	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	92.31	65	5	0	3174	3368	248	312	2e-35	  127	sp|P08100|OPSD_HUMAN	319	60	64	0	98.46	3	0	KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQ	KEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQ	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	18LV3GS19LI7SASA13	22	5	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	91.53	59	5	0	2855	3031	177	235	2e-33	  121	sp|P08100|OPSD_HUMAN	304	54	57	0	96.61	2	0	RYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEVRS	RYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAA	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	6ML34VI14VARASA	22	4	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	93.22	59	4	0	1404	1580	119	177	1e-25	97.1	sp|P08100|OPSD_HUMAN	240	55	56	0	94.92	3	0	LAGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLALTWVMALACAAPPLVGWSR	LGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSR	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	3/0	1AG36LV1LF13VA4	22	4	N/A	N/A	N/A	N/A	N/A
+gi|283855845|gb|GQ290303.1|	sp|P08100|OPSD_HUMAN	88.46	26	3	0	4222	4299	312	337	1e-12	57.0	sp|P08100|OPSD_HUMAN	136	23	24	0	92.31	1	0	QFRNCMLTTLCCGKNPLGDDEASTTA	QFRNCMLTTICCGKNPLGDDEASATV	4301	348	N/A	0	gi|283855845|gb|GQ290303.1|	gi|283855845|gb|GQ290303.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	9LI13TA1AV	22	2	N/A	N/A	N/A	N/A	N/A
+gi|283855822|gb|GQ290312.1|	sp|P08100|OPSD_HUMAN	95.09	326	16	0	1	978	11	336	0.0	  589	sp|P08100|OPSD_HUMAN	1518	310	322	0	98.77	1	0	VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTIPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTT	VPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASAT	983	348	N/A	0	gi|283855822|gb|GQ290312.1|	gi|283855822|gb|GQ290312.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	5KA66ND4FL4TS5ML7AP49LV25ML34VI40VI6LV19VI11SASA21LI13TA1	99	99	N/A	N/A	N/A	N/A	N/A
+gi|18148870|dbj|AB062417.1|	sp|P08100|OPSD_HUMAN	93.39	348	23	0	1	1044	1	348	0.0	  619	sp|P08100|OPSD_HUMAN	1596	325	337	0	96.84	1	0	MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA	1047	348	N/A	0	gi|18148870|dbj|AB062417.1|	gi|18148870|dbj|AB062417.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	1/0	15KA9AY22MV38FL4TS79VA9ML10PLHKEP1TV14IT2LM1VI47LV3GS11DN14TSSA1VI17VL2LI13TA13	99	99	N/A	N/A	N/A	N/A	N/A
+gi|12583664|dbj|AB043817.1|	sp|P08100|OPSD_HUMAN	81.68	333	61	0	23	1021	1	333	0.0	  532	sp|P08100|OPSD_HUMAN	1371	272	307	0	92.19	2	0	MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRTPLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVCKPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTCHFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQGSTFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDG	MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIPEGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEA	1344	348	N/A	0	gi|12583664|dbj|AB043817.1|	gi|12583664|dbj|AB043817.1|	0	0	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	sp|P08100|OPSD_HUMAN	N/A	N/A	2/0	10IV1MF22AQ2AM1SA4FL2IVAL12IVEQ23FL4TS1ML3ML12IL14CS8WYMV5VMTS6SN6MAVF2TV6LA3FA20RLAK1GEIV10TVCV2ST2LMAIVI1SF4RQ2CF12EA3RK2RK6VI4SA2VI9WF8TN9SA5SA1LI3MV3CM6HN2IL2LI6FLEGEDEDDEGA	74	74	N/A	N/A	N/A	N/A	N/A