Mercurial > repos > peterjc > mummer
changeset 17:4437ba33d998 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/mummer commit 9ba9eed9534b49378a4f5c53650f30810d3dcd9c-dirty
| author | peterjc |
|---|---|
| date | Wed, 17 May 2017 13:57:03 -0400 |
| parents | b1de327b0d97 |
| children | 4e867a6655ae |
| files | tools/mummer/mummer.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/tools/mummer/mummer.xml Wed May 10 12:44:05 2017 -0400 +++ b/tools/mummer/mummer.xml Wed May 17 13:57:03 2017 -0400 @@ -17,17 +17,17 @@ <inputs> <!-- Galaxy does not have sub-types for protein vs nucletide FASTA --> <param name="fasta_a" type="data" format="fasta" - label="Species A" - help="Nucleotide FASTA file, e.g. contigs from genome assembly." /> + label="Species A" + help="Nucleotide FASTA file, e.g. contigs from genome assembly."/> <param name="fasta_b" type="data" format="fasta" - label="Species B" - help="Nucleotide FASTA file, e.g. contigs from genome assembly." /> + label="Species B" + help="Nucleotide FASTA file, e.g. contigs from genome assembly."/> <param name="algorithm" type="select" label="MUMmer search algorithm"> <option value="mummer">mummer, efficiently locates maximal unique matches between two sequences</option> <option value="nucmer">NUCmer (NUCleotide MUMmer), for closely related sequences</option> <option value="promer">PROmer (PROtein MUMmer), using six frame translation of DNA input, for less similar sequences.</option> </param> - <!-- defaults like mincluster vary, 65 for nucmer but 20 for promer --> + <!-- defaults like mincluster vary, 65 for nucmer but 20 for promer --> </inputs> <outputs> <data name="pdf_output" format="pdf" label="$algorithm.value PDF: $fasta_a.name vs $fasta_b.name" />