Mercurial > repos > peterjc > mummer

annotate test-data/rhodopsin_nucs.fasta @ 19:9ad1440b5003 draft default tip

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planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/mummer commit e2fa1c599b6670b418479447fe5a181a97a6c834-dirty
author peterjc
date Fri, 15 Sep 2017 10:25:42 -0400
parents 2b784d6311e3
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
7
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
1 >gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
2 ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
3 TCGAGTACCCACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
4 CATCGTGCTTGGCTTCCCCATCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
5 CCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
6 CCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCCCACAGGATGCAATTTGGAGGGCTTCTTTGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
7 CACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTGAGCGGTACGTGGTGGTGTGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
8 AAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACCTGGGTCATGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
9 CACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
10 CGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
11 CACTTCACCATCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
12 CAGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
13 GGTCATTGCTTTCCTGATCTGTTGGGTGCCCTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
14 TCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCTTCGCAAAGTCCTCCTCCATCTACAACCCTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
15 TCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACCCTCTGCTGTGGCAAGAACCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
16 ACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACCGGCCTAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
17
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
18 >gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
19 TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
20 CATACCCATGTCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
21 CCATGGCAATATTCCATTCTGTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
22 TGACCTTGTACGTCACCATCCAGCACAAGAAGCTCCGGACACCCTTAAACTATATCCTGCTGAATTTGGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
23 CTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACGGTGACAATGTACTCCTCAATGAACGGATACTTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
24 ATCCTCGGAGCCACCGGTTGCTATGTTGAAGGCTTCTTCGCTACCCTTGGTGGTGAAATCGCCCTTTGGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
25 CCCTGGTGGTCTTGGCCATTGAACGATACGTGGTCGTCTGTAAGCCCATGAGCAACTTCCGATTTAGTGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
26 GAACCATGCCGTCATGGGCGTAGCGTTCACCTGGATAATGGCTTTGTCCTGTGCTGTTCCTCCACTCCTT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
27 GGATGGTCCAGGTACATCCCCGAGGGCATGCAGTGCTCCTGCGGAGTCGACTACTACACCCTGAAGCCCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
28 AGGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTCGTCCACTTCACCATCCCCCTGATTATCATTTT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
29 CTTCTGCTATGGCCGCCTGGTGTGCACTGTGAAAGAGGCTGCAGCTCAACAGCAAGAGTCCGCCACCACC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
30 CAGAAGGCCGAGAAAGAGGTGACCAGGATGGTGATCATCATGGTGGTCTTCTTCCTTATCTGTTGGGTCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
31 CCTACGCCTCTGTCGCTTTCTTCATCTTCAGCAATCAGGGCTCTGAGTTCGGCCCCATCTTCATGACCGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
32 CCCAGCTTTCTTTGCCAAGAGTTCTTCCATCTACAACCCCGTCATCTACATCATGCTCAACAAGCAGTTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
33 CGTAACTGCATGATCACCACCCTGTGCTGCGGCAAGAATCCCTTTGGAGAAGACGATGCCTCCTCTGCCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
34 CCACCTCCAAGACAGAGGCTTCTTCTGTTTCTTCCAGCCAGGTGTCTCCTGCATAAGACCTTCCACCAGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
35 CCTGTCTCAGGGTCCGCTGCCTCACACAGCTCCCACCGCCCCAACTCCGTCTCCTGCTCGCTAAGGCGGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
36 GAAGTTCCCCTTCCATTACATAAAACGTATCTGTTCAAGAAAGGCGACGACGAAGGAGAAGAAGAGGAGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
37 CCCCCCGAACCCCTTCGCTGCTGCTGAAAACGACTTGATTGCTTCTGCAACGCAACGGGGCCTTACGGCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
38 GCGAAGGGGTTGTCATCCGGACGCGCCAAGAATTCCTTCGAGACTGTAAATATCTTAAAGGAACCGTCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
39 GCTAGTTACCGACGCCGCTCCTGTAGCCGCCGTTCCCCCGCACTCCGGCCGGTTCATACCTCTTATTTTT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
40 TTGCAATGCAACAGAAAATAATATTTTTGTTCCCACGGCTTTTCCCGGTCAGGTCTGGTAGTGGCGGAGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
41 TTGGCCGACCCCTCGCACCTGTAATAAAGCGCAG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
42
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
43 >gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
44 GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
45 CATGGCAGTTCTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
46 CACGCTCTATGTCACGGTTCAGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
47 GTGGCCGACCTCTTCATGGTCTTCGGAGGCTTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
48 TCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGCCACCCTGGGAGGTATGAGCTGAGATGCGGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
49 TAAGGAGGAGGCATAGAGGCATCTGGGAACAGTCCCAAGCTTGGGGTGAAGGCTAAGAGGCCTTCTTCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
50 TGTTCTGTCATTGGCGTCGTCCGAAGCCCTCACTTAATCAACAAACAGTTTGGTGGTGAGGCGCTGAGCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
51 CCATTTGGAGAGGGCAGGTATCGAGCACTGTTTTATCCCCCCTGGAGTGGTGCCATTGCCTTGCTTTACA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
52 GCAAAGAAACTGAGGATGAGAGGAGTCGAGGGTCTTGCCAGGTCACATCATGGCAGAGACAGAGCTGAGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
53 TTCAACCCTGCATCTATGTGCAGTTTCCCTTGGAGCAGCTATGTTAGGTCAGACCCACGGTGGGCACTGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
54 GGAGAGAGCTGCACAAGACAGGTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
55 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGATTGCCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
56 GGAGTGATGTGCAGCGCAAATGTCTGAATTCCATTATTATGTGCTCCTTCTTCCTCTGAGCCAAACATCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
57 ATCTTCATGGCTCCTAGAATTGGGTCCCACCCACATGAGCAGGTCATTTTGTTTCCCTAGAGGGGAGAGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
58 TCACTGCTGTGGAGGGAGGGAAGGTTCGTCCCGCTCCATGTTTCTGTTGTCTCTGCAATGCCTTTCTCTA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
59 GGGACTCTGCCTATTGCCCCAAGAAGGACACATTCTTCTGTAAAAACTCCCTCCTGGGTTCCCAGTCTAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
60 TCAAGACCTCTAAACTGATTTCCATGTCCCTCATGAACCCAAAGCTCTAACTGAATTAAACTTCTCAGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
61 CTTACTCCACTCTCCTCGTCCATCATGCAGCCCCTCTGCCCAGCACCCTATCTCCTCTTCTTCCCAGTGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
62 CTGAGCCCACTGTACCCTGAGACTTCGCTCCAGGCCTGCCCCAGGCTGCCTTCTCAGGTGCCCTCTCCCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
63 CATAGGAGGAGCACGGCCTCCTTAGACAGACGTGGGGTGCAGGTTGGTGGCATGCTGACTGATAGCTGAC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
64 TGCCTTGCAGGTGAAATTGCCCTGTGGTCCTTGGTGGTCCTGGCCATCGAGCGGTACGTGGTGGTATGCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
65 AGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTTGCCCTCACCTGGGTCATGGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
66 ACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTAATGGCACTGAACAGAAGGGAAGTGCCTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
67 TGAGGTCTTCTTAGGGTCCCCCAGCTGGGACTCAAACCTAGGGCTGTCTGGTTCCAGGCACGGAACTGGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
68 GACTCCACTGGGGTTGGGGTTTAGGGCAAGGAAGGAGAGGATCAGACCCTAATGTTGTTACGTGGGTTGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
69 TCCGCATGTCAAGGAGAATCCAAGACACCCAATCCTTCACCTTGGCTGTGCCCCTAATCCTCATCTAAGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
70 CAGGTTCAGATTCCAATCCTCTTTGGCCCAGTGCTCCGTGGGAAGCTCCCTCTGACCTTGGGCCTCAGCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
71 CCTGGGGTTGCTGAGCCTTCCTAGTATAGGTGGTGACATCGTAGCCCCTGGGACCTGGATCCTGCCCAGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
72 CTGCAGGCCATCATCTCCAAATGGGGCTGAGATGAGATGTGAGGAAAGAGGGGAGACAGTGGTTTGGAAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
73 ACTGGACTGGTGGCTTTTTTGGGTTTCCAGAGGACTCATCTTCCTCTGCTTCTAGAATATTCCCACTCTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
74 TCTTCCCTTTCCTCATTCTTCCTGGGTTATTTTTTTTTCCCTTTGCTGAATTCGAGCCCCATTCCCTCCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
75 GCCTCTTTCCCTGTCTTATCTAGCCCAGTCCAGTTATATTCTCATAGGCAGAGGCAACAGATGCTCCAAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
76 TTTTCTGAGGTCGGTTCCAACATCGCCACCCTCTAAAATCAGTGAAACATCCTAACTACATGCCTCATAG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
77 TCCTCCTGTTTCCAAAAACTGCAAAGATCTCCTGGTTACCCTGTATGCCCATCTTTGGGCTAGAAAATCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
78 TCTCACCCTGTTAATAGTAAGACCCTGGTTTGTACAAACTGCCTCAAACACAGAGTTTAGGGGCTTTTCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
79 CTTCTCTCCGCCAACCTCTGACAGGCAGAGTCTGAGGCCTGGCCTCCAGCTGCTGCGGGGAGCAGGTCTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
80 GTAAAGAATCCTGTGCAGGTCAGTGGTATACAGGTCCTGTCAGGTGACAGCCTGGGCGAGAGACTGGAAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
81 GTATCAGGATAACACGGCTGCCAGACGAACAACAAAACAACACTGAATTCACAAGGCGCATTCGAATCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
82 CTCTCAGTCCATTTGATCCTCAGTCACACAGCCGAGTAGACACTTTATCAACTCATTTAACAGAAAGGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
83 AAGTGAAGCCCAGAGCGAGGCCAGCAACGTGGCAGGTCACTCTGGTCATCTAGGGCCTGTTCCCAACTCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
84 TTCACATGTGGGTCTCCAATATGTTCCCTCCTGTCCCAATCTCTGCCGGCCCTCAGGTACATCCCAGAGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
85 GCATGCAGTGCTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
86 CTACATGTTCGTGGTCCACTTCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
87 ACCGTCAAGGAGGTAAGGTCATGTGTTGGGCACTGGGGACATGCACACTGAGTGAATGGAGCCCAGCTCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
88 ATTCCCAGAGTTGCCACAGTCTGGACACCTGACCTTGTGTCCCTGCAGGCAGCTGCCCAGCAGCAGGAGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
89 CAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATCATGGTCATTGCTTTCCTAAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
90 CTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTTTGGCCCCATC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
91 TTCATGACCCTCCCGGCATTCTTTGCCAAGTCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
92 ACAAGCAGGTGCCAGGTGGTAGGGAGGGAGGGTCTGGGTCCCCCAGGCTGCAGGCACTGCCCACAGAGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
93 CAAGCCACATCCTTGACTAGGCAGACCCCAGTCTTCCCATCTGCAAAATTAGGCAGGGGAGTTCGTCTCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
94 CCCAGGCATCAGAGACATCGGGGAGAAATGCACATTTCTGGAGATGAATCAGCATCTCAGGGTGGGCCCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
95 GGAACCTGCACTTCTAAAAACCATTCCACATGACTCTGAGGCTAGCATGAGAAGTGATGATCCACATGGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
96 TCTGGAGGCCTGCTTTAAAAGTCAAGTGGTCAAAGTCCCAAGCCTGGGAACGGGATGGTGCCAGTCTCCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
97 TTAAAGAGATCAAAAGGAGCTAGAAAGTCTTGTGATGAAAGATGAAGGGATAAAGCCGTCCTTTAACACA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
98 GATCAGTGATTTCTCTGCAGAATCCATGACCCAGTGGGAAAAAGTGGTCCCTGGAGTCAGGCATATTGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
99 TTCAAATCCTAGCTCTGCTATTTTCTAGCTATGTAACCTTGGGCAAGTCATCTCCCTTCTCTGTGCTTCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
100 GTTTCTTCTTTCATAGAAAGGGTAAAATCCCAAACTCTTGGGTTAAATGAGATAACTTACATAGCCCTTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
101 ATATGCAGAGGCATTATGGAATGTCGTTAGTGACAAAGTTCCCTTGGGTTTGGTCCCTGGTATCTCTGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
102 GTGAGATTGCATATGTTCCCTTCAGAGGGTCAGATTTGGGATGAGAGTGGAGGCTGCGAGGGCCTGAGTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
103 GGAAGGGATTGGAGGCAAATCTCACCAACCATGTCAGTTTGCTACACACACTTTGGGTGGACCCTGACCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
104 TGACTCATGCTTCTTGCCTTCCAGTTCCGGAACTGCATGCTCACTACCCTCTGCTGTGGCAAGAACCCAC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
105 TGGGTGACGATGAGGCCTCCACCACTGCCTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
106
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
107 >gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
108 GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
109 CCTGGCAGTTCTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
110 CACGCTCTACGTCACCGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
111 GTGGCCAACCTCTTCATGGTCTTTGGAGGCTTCACCACCACCCTGTATACCTCTATGCATGGATACTTCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
112 TCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGCCACGCTGGGCGGTGAAATCGCCCTGTGGTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
113 CCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGAGCAACTTCCGCTTTGGGGAG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
114 AACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCCCCACTAGCCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
115 GCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
116 GGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
117 TTCTGCTACGGACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
118 AGAAGGCCGAGAAGGAAGTCACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
119 CTACGCCAGCGTGGCATTCTACATCTTTACCCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
120 CCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGGTCATCTATATCATGATGAACAAGCAGTTCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
121 GGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAAGCATCCACCACTGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
122 CTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
123
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
124 >gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
125 ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
126 TCGAGGCGCCGCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
127 GATCATGCTTGGCTTCCCCATCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
128 CCCCTCAACTACATCCTGCTCAACCTGGCCGTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
129 CCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCCGACGGGCTGCAACCTCGAGGGCTTCTTTGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
130 CACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCGAGCGGTACGTAGTGGTGTGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
131 AAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACCTGGGTCATGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
132 CTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
133 CGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
134 CACTTCATCATCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
135 CAGCCCAGCAGCAGGAGTCGGCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
136 GGTCATCGCTTTCCTCATATGCTGGCTGCCCTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
137 TCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCTTTGCCAAGACGTCTGCCGTCTATAACCCCG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
138 TCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACTCTCTGCTGTGGCAAGAACCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
139 CCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCCTGCCTAA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
140
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
141 >gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
142 CCGCTACTGACGAACCGCAACCATGAACGGCACTGAGGGACCTAACTTCTACATCCCCATGTCAAACGCC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
143 ACTGGTGTAGTGAGGAGTCCATTTGAATACCCGCAGTACTACCTTGCAGAACCATGGGCTTTCTCAGCTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
144 TGTCTGCCTACATGTTCTTCCTGATTATCGCCGGATTCCCCATCAACTTCCTCACCCTGTATGTCACCAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
145 CGAACATAAGAAACTGAGGACCCCACTGAACTACATTCTGCTGAACCTGGCCGTGGCCGACCTCTTCATG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
146 GTGTTTGGCGGATTCACCACCACGATGTACACCTCCATGCACGGCTACTTTGTCTTCGGCCCCACCGGCT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
147 GCAACATCGAAGGGTTCTTCGCCACCCTCGGCGGCGAGATTGCCCTCTGGTGCCTCGTTGTCCTGGCCAT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
148 TGAAAGGTGGATGGTCGTCTGCAAGCCAGTGACCAATTTCCGCTTCGGTGAGAGCCATGCCATCATGGGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
149 GTCATGGTGACCTGGACCATGGCATTGGCCTGTGCCCTCCCCCCTCTCTTCGGCTGGTCTCGGTACATTC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
150 CGGAAGGTCTGCAGTGCTCGTGCGGGATCGACTACTATACCCGGGCGCCTGGGATCAACAATGAGTCCTT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
151 TGTGATCTACATGTTTACCTGCCACTTCTCCATCCCACTCGCCGTCATCTCTTTCTGCTACGGCCGACTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
152 GTGTGCACCGTCAAAGAGGCCGCTGCCCAGCAACAGGAGTCCGAGACCACCCAGAGGGCTGAGCGGGAGG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
153 TCACCCGCATGGTCGTCATCATGGTCATCTCCTTCCTGGTCTGCTGGGTGCCCTATGCCAGTGTGGCCTG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
154 GTACATCTTTACCCACCAGGGAAGCACTTTTGGGCCCATCTTCATGACCATTCCATCCTTCTTTGCCAAG
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
155 AGTTCAGCCCTCTACAACCCCATGATCTACATCTGCATGAACAAGCAGTTCCGCCATTGCATGATCACCA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
156 CCCTCTGCTGTGGGAAGAACCCCTTCGAGGAGGAGGATGGAGCGTCCGCCACTAGCTCTAAAACTGAGGC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
157 TTCATCCGTGTCCTCCAGCTCTGTCTCCCCGGCATAAACCTTGTTTGACCGAACACCACGCATCAACACA
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
158 AAGACCAAGAATGCTGACTAAATGCTAACATTTCAGGGAAATCCAAAGACTTTTTACTATTTTTTTACAC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
159 AACCATATAGGTTGCAAACAGAGGTTTAGCCCTGTTTACAGGTTGTCATCAATGTGATGTCAGTATGTAC
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
160 AATATAGTCAACTTGATAGCAAGTTGTTGGCTTATTTCAGATTGTATGGGCAATGTAATCAACCATATGT
2b784d6311e3 Uploaded v0.0.4b, smaller test case with relaxed checking
peterjc
parents:
diff changeset
161 GAAATAAATTGCAA