Mercurial > repos > peterjc > mira_datatypes
changeset 1:54318d4bcadd draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/datatypes/mira_datatypes commit 6c847766578b830749971753148246101bbe0983
| author | peterjc |
|---|---|
| date | Tue, 15 Sep 2015 09:43:39 -0400 |
| parents | 29ff2a2b6eaa |
| children | 2b5ff55127c3 |
| files | README.rst |
| diffstat | 1 files changed, 7 insertions(+), 7 deletions(-) [+] |
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--- a/README.rst Thu Sep 26 12:20:05 2013 -0400 +++ b/README.rst Tue Sep 15 09:43:39 2015 -0400 @@ -40,10 +40,10 @@ Normally you would install this via the Galaxy ToolShed, which would move the provided mira.py file into a suitable location and process the -datatypes_conf.xml entry to be combined with your local configuration. +``datatypes_conf.xml`` entry to be combined with your local configuration. However, if you really want to this should work for a manual install. Add -the following lines to the datatypes_conf.xml file in the Galaxy main folder:: +the following lines to the ``datatypes_conf.xml`` file in the Galaxy main folder:: <datatype extension="mira" type="galaxy.datatypes.mira:MiraAssemblyFormat" mimetype="text/plain" display_in_upload="true"/> @@ -51,9 +51,9 @@ <sniffer type="galaxy.datatypes.mira:MiraAssemblyFormat"/> -Also create the file lib/galaxy/datatypes/mira.py by moving, copying or linking -the mira.py file provided in this tar-ball. Finally add 'import mira' near -the start of file lib/galaxy/datatypes/registry.py (after the other import +Also create the file ``lib/galaxy/datatypes/mira.py`` by moving, copying or linking +the mira.py file provided in this tar-ball. Finally add ``import mira`` near +the start of file ``lib/galaxy/datatypes/registry.py`` (after the other import lines). @@ -71,7 +71,7 @@ https://github.com/peterjc/pico_galaxy For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use -the following command from the mira_datatypes folder:: +the following command from the ``mira_datatypes`` folder:: $ tar -czf mira_datatypes.tar.gz README.rst datatypes_conf.xml mira.py @@ -83,7 +83,7 @@ mira.py For development, rather than having a local ToolShed running, I currently -use a symlink from lib/galaxy/datatypes/mira.py to the actual file as +use a symlink from ``lib/galaxy/datatypes/mira.py`` to the actual file as described above.