Mercurial > repos > peterjc > mira_assembler
changeset 4:03743667463c draft
Uploaded v0.0.7, take 2, included the tool_dependencies.xml file
| author | peterjc |
|---|---|
| date | Wed, 24 Apr 2013 12:47:08 -0400 |
| parents | c1c7d6f726b0 |
| children | c6bbce601b69 |
| files | tools/mira_3_4/mira.txt tools/mira_3_4/tool_dependencies.xml |
| diffstat | 2 files changed, 27 insertions(+), 1 deletions(-) [+] |
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--- a/tools/mira_3_4/mira.txt Wed Apr 24 12:08:51 2013 -0400 +++ b/tools/mira_3_4/mira.txt Wed Apr 24 12:47:08 2013 -0400 @@ -72,7 +72,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder: -tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.* +$ tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.* tools/mira_3_4/tool_dependencies.xml Check this worked: @@ -80,6 +80,7 @@ tools/mira_3_4/mira.py tools/mira_3_4/mira.txt tools/mira_3_4/mira.xml +tools/mira_3_4/tool_dependencies.xml Licence (MIT/BSD style)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/mira_3_4/tool_dependencies.xml Wed Apr 24 12:47:08 2013 -0400 @@ -0,0 +1,25 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="MIRA" version="3.4.1.1"> + <install version="1.0"> + <actions> + <!-- Sourceforge doesn't offer nice clean download URLs which is a shame --> + <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fmira-assembler%2Ffiles%2FMIRA%2Fstable%2F&ts=1366819213&use_mirror=kent</action> + <!-- Currently we only need the main binary itself, mira --> + <action type="move_file"><source>mira_3.4.1.1_prod_linux-gnu_x86_64_static/bin/mira</source><destination>$INSTALL_DIR/</destination></action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + <readme> +Downloads MIRA v3.4 from Sourceforge, requesting Bastien's precompiled binaries +for 64bit Linux (x86_64). He also has binaries for 32bit Linux, which we could +use if/when the Galaxy installation framework allow that kind of flexibility. + +http://chevreux.org/projects_mira.html +http://sourceforge.net/projects/mira-assembler/ + </readme> + </package> +</tool_dependency> +