# HG changeset patch
# User peterjc
# Date 1366822028 14400
# Node ID 03743667463c6dba7d4a0725da2b78e58238ac14
# Parent  c1c7d6f726b00b32e1b342f3a2e9983c8f1e5033
Uploaded v0.0.7, take 2, included the tool_dependencies.xml file

diff -r c1c7d6f726b0 -r 03743667463c tools/mira_3_4/mira.txt
--- a/tools/mira_3_4/mira.txt	Wed Apr 24 12:08:51 2013 -0400
+++ b/tools/mira_3_4/mira.txt	Wed Apr 24 12:47:08 2013 -0400
@@ -72,7 +72,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder:
 
-tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.*
+$ tar -czf mira_wrapper.tar.gz tools/mira_3_4/mira.* tools/mira_3_4/tool_dependencies.xml
 
 Check this worked:
 
@@ -80,6 +80,7 @@
 tools/mira_3_4/mira.py
 tools/mira_3_4/mira.txt
 tools/mira_3_4/mira.xml
+tools/mira_3_4/tool_dependencies.xml
 
 
 Licence (MIT/BSD style)
diff -r c1c7d6f726b0 -r 03743667463c tools/mira_3_4/tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/mira_3_4/tool_dependencies.xml	Wed Apr 24 12:47:08 2013 -0400
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="MIRA" version="3.4.1.1">
+        <install version="1.0">
+            <actions>
+                <!-- Sourceforge doesn't offer nice clean download URLs which is a shame -->      
+                <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fmira-assembler%2Ffiles%2FMIRA%2Fstable%2F&ts=1366819213&use_mirror=kent</action>
+                <!-- Currently we only need the main binary itself, mira -->
+                <action type="move_file"><source>mira_3.4.1.1_prod_linux-gnu_x86_64_static/bin/mira</source><destination>$INSTALL_DIR/</destination></action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Downloads MIRA v3.4 from Sourceforge, requesting Bastien's precompiled binaries
+for 64bit Linux (x86_64). He also has binaries for 32bit Linux, which we could
+use if/when the Galaxy installation framework allow that kind of flexibility.
+
+http://chevreux.org/projects_mira.html
+http://sourceforge.net/projects/mira-assembler/
+        </readme>
+    </package>
+</tool_dependency>
+