Mercurial > repos > peterjc > mira4_assembler
changeset 16:4c6e4d583b8f draft
Uploaded v0.0.2 preview 8, includes mira_datatypes dependency
| author | peterjc |
|---|---|
| date | Tue, 25 Feb 2014 13:13:17 -0500 |
| parents | b0ffe0e7282b |
| children | 5bbaa930d7fa |
| files | tools/mira4/README.rst tools/mira4/repository_dependencies.xml |
| diffstat | 2 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/tools/mira4/README.rst Thu Feb 20 05:07:19 2014 -0500 +++ b/tools/mira4/README.rst Tue Feb 25 13:13:17 2014 -0500 @@ -98,7 +98,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat + $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat Check this worked:: @@ -112,6 +112,7 @@ tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml + tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/mira4/repository_dependencies.xml Tue Feb 25 13:13:17 2014 -0500 @@ -0,0 +1,4 @@ +<?xml version="1.0"?> +<repositories description="This requires the MIRA datatype definitions (e.g. the MIRA Assembly Format)."> + <repository changeset_revision="29ff2a2b6eaa" name="mira_datatypes" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" /> +</repositories>