# HG changeset patch
# User peterjc
# Date 1393351997 18000
# Node ID 4c6e4d583b8f903fe8b2f6da94c51ceb4e234d85
# Parent  b0ffe0e7282b2e8c088d6cfe4af4da6cfe438e89
Uploaded v0.0.2 preview 8, includes mira_datatypes dependency

diff -r b0ffe0e7282b -r 4c6e4d583b8f tools/mira4/README.rst
--- a/tools/mira4/README.rst	Thu Feb 20 05:07:19 2014 -0500
+++ b/tools/mira4/README.rst	Tue Feb 25 13:13:17 2014 -0500
@@ -98,7 +98,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
+    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
 
 Check this worked::
 
@@ -112,6 +112,7 @@
     tools/mira4/mira4_validator.py
     tools/mira4/mira4_bait.py
     tools/mira4/tool_dependencies.xml
+    tools/mira4/repository_dependencies.xml
     test-data/tvc_mini.fastq
     test-data/tvc_contigs.fasta
     test-data/tvc_map_ref_strain.fasta
diff -r b0ffe0e7282b -r 4c6e4d583b8f tools/mira4/repository_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/mira4/repository_dependencies.xml	Tue Feb 25 13:13:17 2014 -0500
@@ -0,0 +1,4 @@
+<?xml version="1.0"?>
+<repositories description="This requires the MIRA datatype definitions (e.g. the MIRA Assembly Format).">
+    <repository changeset_revision="29ff2a2b6eaa" name="mira_datatypes" owner="peterjc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+</repositories>