Mercurial > repos > peterjc > mira4_assembler

<?xml version="1.0"?>
<tool_dependency>
    <package name="samtools" version="0.1.19">
        <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="MIRA" version="4.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0rc4_linux-gnu_x86_64_static.tar.bz2</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Downloads MIRA v4.0 from Sourceforge, requesting Bastien's precompiled binaries
for 64bit Linux (x86_64). He also has binaries for Mac OS X, which we could
use once the extensions to allow that are in the stable Galaxy releases.

http://chevreux.org/projects_mira.html
http://sourceforge.net/projects/mira-assembler/
        </readme>
    </package>
</tool_dependency>
author	peterjc
date	Thu, 28 Nov 2013 05:07:59 -0500
parents	2ab1d6f6a8ec
children	79759fdec6cb