Mercurial > repos > peterjc > mira4_assembler

diff tools/mira4/README.rst @ 17:5bbaa930d7fa draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.2 preview 9, more functional tests
author peterjc
date Mon, 03 Mar 2014 11:49:21 -0500
parents 4c6e4d583b8f
children 381aa262c8cb
line wrap: on
line diff
--- a/tools/mira4/README.rst	Tue Feb 25 13:13:17 2014 -0500
+++ b/tools/mira4/README.rst	Mon Mar 03 11:49:21 2014 -0500
@@ -98,7 +98,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
+    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/U13small_m.fastq test-data/U13small_m.mira4_de_novo.fasta test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
 
 Check this worked::
 
@@ -113,6 +113,8 @@
     tools/mira4/mira4_bait.py
     tools/mira4/tool_dependencies.xml
     tools/mira4/repository_dependencies.xml
+    test-data/U13small_m.fastq
+    test-data/U13small_m.mira4_de_novo.fasta
     test-data/tvc_mini.fastq
     test-data/tvc_contigs.fasta
     test-data/tvc_map_ref_strain.fasta