Mercurial > repos > peterjc > mira4_assembler
comparison tools/mira4/README.rst @ 17:5bbaa930d7fa draft
Uploaded v0.0.2 preview 9, more functional tests
| author | peterjc |
|---|---|
| date | Mon, 03 Mar 2014 11:49:21 -0500 |
| parents | 4c6e4d583b8f |
| children | 381aa262c8cb |
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| 16:4c6e4d583b8f | 17:5bbaa930d7fa |
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| 96 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira4 | 96 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira4 |
| 97 | 97 |
| 98 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use | 98 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use |
| 99 the following command from the Galaxy root folder:: | 99 the following command from the Galaxy root folder:: |
| 100 | 100 |
| 101 $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat | 101 $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/U13small_m.fastq test-data/U13small_m.mira4_de_novo.fasta test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat |
| 102 | 102 |
| 103 Check this worked:: | 103 Check this worked:: |
| 104 | 104 |
| 105 $ tar -tzf mira4_wrapper.tar.gz | 105 $ tar -tzf mira4_wrapper.tar.gz |
| 106 tools/mira4/README.rst | 106 tools/mira4/README.rst |
| 111 tools/mira4/mira4_make_bam.py | 111 tools/mira4/mira4_make_bam.py |
| 112 tools/mira4/mira4_validator.py | 112 tools/mira4/mira4_validator.py |
| 113 tools/mira4/mira4_bait.py | 113 tools/mira4/mira4_bait.py |
| 114 tools/mira4/tool_dependencies.xml | 114 tools/mira4/tool_dependencies.xml |
| 115 tools/mira4/repository_dependencies.xml | 115 tools/mira4/repository_dependencies.xml |
| 116 test-data/U13small_m.fastq | |
| 117 test-data/U13small_m.mira4_de_novo.fasta | |
| 116 test-data/tvc_mini.fastq | 118 test-data/tvc_mini.fastq |
| 117 test-data/tvc_contigs.fasta | 119 test-data/tvc_contigs.fasta |
| 118 test-data/tvc_map_ref_strain.fasta | 120 test-data/tvc_map_ref_strain.fasta |
| 119 test-data/tvc_map_same_strain.fasta | 121 test-data/tvc_map_same_strain.fasta |
| 120 test-data/tvc_bait.fasta | 122 test-data/tvc_bait.fasta |