Mercurial > repos > peterjc > mira4_assembler

diff tools/mira4/README.rst @ 16:4c6e4d583b8f draft

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Uploaded v0.0.2 preview 8, includes mira_datatypes dependency
author peterjc
date Tue, 25 Feb 2014 13:13:17 -0500
parents 133b863a8a40
children 5bbaa930d7fa
line wrap: on
line diff
--- a/tools/mira4/README.rst	Thu Feb 20 05:07:19 2014 -0500
+++ b/tools/mira4/README.rst	Tue Feb 25 13:13:17 2014 -0500
@@ -98,7 +98,7 @@
 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder::
 
-    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
+    $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
 
 Check this worked::
 
@@ -112,6 +112,7 @@
     tools/mira4/mira4_validator.py
     tools/mira4/mira4_bait.py
     tools/mira4/tool_dependencies.xml
+    tools/mira4/repository_dependencies.xml
     test-data/tvc_mini.fastq
     test-data/tvc_contigs.fasta
     test-data/tvc_map_ref_strain.fasta