Mercurial > repos > peterjc > mira4_assembler

comparison tools/mira4/README.rst @ 16:4c6e4d583b8f draft

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Uploaded v0.0.2 preview 8, includes mira_datatypes dependency
author peterjc
date Tue, 25 Feb 2014 13:13:17 -0500
parents 133b863a8a40
children 5bbaa930d7fa
comparison
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15:b0ffe0e7282b 16:4c6e4d583b8f
96 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira4 96 https://github.com/peterjc/pico_galaxy/tree/master/tools/mira4
97 97
98 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 98 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
99 the following command from the Galaxy root folder:: 99 the following command from the Galaxy root folder::
100 100
101 $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat 101 $ tar -czf mira4_wrapper.tar.gz tools/mira4/README.rst tools/mira4/mira4_de_novo.xml tools/mira4/mira4_mapping.xml tools/mira4/mira4_bait.xml tools/mira4/mira4.py tools/mira4/mira4_make_bam.py tools/mira4/mira4_validator.py tools/mira4/mira4_bait.py tools/mira4/tool_dependencies.xml tools/mira4/repository_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/tvc_map_ref_strain.fasta test-data/tvc_map_same_strain.fasta test-data/tvc_bait.fasta test-data/tvc_mini_bait_pos.fastq test-data/tvc_mini_bait_strict.fastq test-data/tvc_mini_bait_neg.fastq test-data/ecoli.fastq test-data/ecoli.mira4_de_novo.fasta test-data/empty_file.dat
102 102
103 Check this worked:: 103 Check this worked::
104 104
105 $ tar -tzf mira4_wrapper.tar.gz 105 $ tar -tzf mira4_wrapper.tar.gz
106 tools/mira4/README.rst 106 tools/mira4/README.rst
110 tools/mira4/mira4.py 110 tools/mira4/mira4.py
111 tools/mira4/mira4_make_bam.py 111 tools/mira4/mira4_make_bam.py
112 tools/mira4/mira4_validator.py 112 tools/mira4/mira4_validator.py
113 tools/mira4/mira4_bait.py 113 tools/mira4/mira4_bait.py
114 tools/mira4/tool_dependencies.xml 114 tools/mira4/tool_dependencies.xml
115 tools/mira4/repository_dependencies.xml
115 test-data/tvc_mini.fastq 116 test-data/tvc_mini.fastq
116 test-data/tvc_contigs.fasta 117 test-data/tvc_contigs.fasta
117 test-data/tvc_map_ref_strain.fasta 118 test-data/tvc_map_ref_strain.fasta
118 test-data/tvc_map_same_strain.fasta 119 test-data/tvc_map_same_strain.fasta
119 test-data/tvc_bait.fasta 120 test-data/tvc_bait.fasta