comparison tools/mira4_0/mira4_make_bam.py @ 34:0785a6537f3e draft

planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c

33:1291ed21789f

def run(cmd, log_handle):
    try:
        child = subprocess.Popen(cmd, shell=True,
                                 stdout=subprocess.PIPE,
                                 stderr=subprocess.STDOUT)
    except Exception as err:
        sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err))
        # TODO - call clean up?

34:0785a6537f3e

def run(cmd, log_handle):
    try:
        child = subprocess.Popen(cmd, shell=True,
                                 universal_newlines=True,
                                 stdout=subprocess.PIPE,
                                 stderr=subprocess.STDOUT)
    except Exception as err:
        sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err))
        # TODO - call clean up?