Mercurial > repos > peterjc > mira4_assembler

diff tools/mira4_0/mira4_make_bam.py @ 34:0785a6537f3e draft

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planemo upload for repository https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0 commit 6405ba93fcec7ea93452bf54d559c7507ee7a57c
author peterjc
date Wed, 07 Jun 2017 12:33:39 -0400
parents 56b421d59805
children 259891fce7fd
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line diff
--- a/tools/mira4_0/mira4_make_bam.py	Fri Jun 02 11:22:01 2017 -0400
+++ b/tools/mira4_0/mira4_make_bam.py	Wed Jun 07 12:33:39 2017 -0400
@@ -12,6 +12,7 @@
 def run(cmd, log_handle):
     try:
         child = subprocess.Popen(cmd, shell=True,
+                                 universal_newlines=True,
                                  stdout=subprocess.PIPE,
                                  stderr=subprocess.STDOUT)
     except Exception as err: