Mercurial > repos > peterjc > get_orfs_or_cdss
changeset 19:4842509a4179 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 5fb6ee31f33e8e24c1ae5d56c93ac3e0157dad72-dirty
author | peterjc |
---|---|
date | Thu, 09 Feb 2017 11:23:34 -0500 |
parents | 3c62da35b5bd |
children | 036e4151b27a |
files | tools/get_orfs_or_cdss/get_orfs_or_cdss.py |
diffstat | 1 files changed, 4 insertions(+), 1 deletions(-) [+] |
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--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Sat Jan 09 23:39:23 2016 -0500 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Thu Feb 09 11:23:34 2017 -0500 @@ -17,8 +17,10 @@ See accompanying text file for licence details (MIT licence). """ + +import re import sys -import re + from optparse import OptionParser usage = """Use as follows: @@ -210,6 +212,7 @@ raise StopIteration yield values[0] + if options.mode == "all": get_peptides = get_all_peptides elif options.mode == "top":