# HG changeset patch # User peterjc # Date 1486657414 18000 # Node ID 4842509a41794e9c0dc6dbe410f1cd85c32ae3a1 # Parent 3c62da35b5bd84aa668fd7dfc3c67df3009101ab planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/get_orfs_or_cdss commit 5fb6ee31f33e8e24c1ae5d56c93ac3e0157dad72-dirty diff -r 3c62da35b5bd -r 4842509a4179 tools/get_orfs_or_cdss/get_orfs_or_cdss.py --- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Sat Jan 09 23:39:23 2016 -0500 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Thu Feb 09 11:23:34 2017 -0500 @@ -17,8 +17,10 @@ See accompanying text file for licence details (MIT licence). """ + +import re import sys -import re + from optparse import OptionParser usage = """Use as follows: @@ -210,6 +212,7 @@ raise StopIteration yield values[0] + if options.mode == "all": get_peptides = get_all_peptides elif options.mode == "top":